chr1 : 229,090,571 229,091,190
619 bp 31 TFs 3 linked genes
This 619 bp open chromatin element is linked to RAB4A, CCSAP, and RHOU and is bound by 31 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
RAB4A 180.3 kb Distal Multiome
CCSAP 252.5 kb Distal Multiome
RHOU 355.3 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:229,085,571 – 229,096,190
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ATF3 2 datasets
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 123 bp overlap
ChIP HepG2 ENCFF832LTU 317 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 257 bp overlap
ChIP K562 ENCFF674KTF 370 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 122 bp overlap
CEBPB 6 datasets
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 106 bp overlap
ChIP HepG2 ENCFF074JWB 201 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
CEBPG 3 datasets
ChIP HepG2 ENCFF503XBC 134 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 282 bp overlap
ChIP K562 ENCFF783ADE 446 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 436 bp overlap
ChIP BLaER1 ENCFF274GAT 412 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF674RQO 315 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 196 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 443 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 619 bp overlap
ChIP DE DE-FOXA2-2 619 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 401 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 619 bp overlap
ChIP DE DE-GATA4-2 601 bp overlap
ChIP foregut GSE117136.GATA4.foregut 246 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 294 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 575 bp overlap
ChIP DE DE-GATA6-2 601 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 325 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 515 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 289 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 402 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 296 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 326 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 388 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 122 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 337 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 491 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 404 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 537 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 370 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 308 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 301 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 250 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 89 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 463 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 339 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 233 bp overlap
ZNF362 3 datasets
ChIP HEK293 ENCFF436CGE 134 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 302 bp overlap
ChIP HepG2 ENCFF256AZN 249 bp overlap
ZNF384 4 datasets
ChIP HEK293T ENCFF019DZX 246 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 249 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 135 bp overlap
ChIP HepG2 ENCFF129PLC 271 bp overlap
ZNF460 1 dataset
ChIP HepG2 ENCFF007NNM 206 bp overlap
ZNF770 4 datasets
ChIP HEK293 ENCFF468FCG 201 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 414 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 601 bp overlap
ChIP HepG2 ENCFF233UVH 302 bp overlap