chr1 : 221,978,604 221,979,204
600 bp 45 TFs 0 linked genes
This 600 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:221,973,604 – 221,984,204
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 133 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 110 bp overlap
CEBPA 2 datasets
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 92 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 163 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 127 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 148 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 105 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EGR1 6 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 218 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 213 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 143 bp overlap
ChIP K562 ENCFF006PJY 219 bp overlap
ChIP K562 ENCFF113OPQ 332 bp overlap
ChIP K562 ENCFF895KGN 279 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 287 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 132 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
GATA6 1 dataset
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 160 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 5 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 504 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 523 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 600 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 451 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 146 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 318 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 271 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 423 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 412 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 406 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 346 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 211 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 152 bp overlap
POU5F1 23 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 156 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 564 bp overlap
ChIP GM23338 ENCFF333SNB 237 bp overlap
ChIP H1 ENCFF698ZAP 140 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 408 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 250 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 381 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 182 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 234 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 228 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 185 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 194 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 202 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 236 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 129 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 219 bp overlap
ChIP hESC GSE20650.POU5F1.hESC 148 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 382 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 362 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 222 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 177 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 237 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 135 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 578 bp overlap
RELA 1 dataset
ChIP BJAB_4h-activation GSE117250.RELA.BJAB_4h-activation 121 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 82 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 343 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 307 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 254 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 290 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 189 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 259 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 70 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 339 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 107 bp overlap