chr13 : 52,849,838 52,850,013
175 bp 29 TFs 1 linked gene
This 175 bp open chromatin element is linked to PCDH8 and is bound by 29 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PCDH8 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:52,844,838 – 52,855,013
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 131 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 175 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 154 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 175 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 131 bp overlap
CTCF 2 datasets
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 175 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 66 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 175 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 138 bp overlap
EZH2 12 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 88 bp overlap
ChIP A673 ENCFF955JRZ 175 bp overlap
ChIP GM23338 ENCFF613YON 164 bp overlap
ChIP H1 ENCFF232NZA 175 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 175 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 175 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 175 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 103 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 175 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 175 bp overlap
ChIP neural progenitor cell ENCFF472NFV 175 bp overlap
ChIP neural progenitor cell ENCFF472NFV 175 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 175 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 175 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 139 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 141 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 175 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 175 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 101 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 175 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 175 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 129 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 149 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 175 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 82 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 175 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 175 bp overlap
REST 7 datasets
ChIP CD4 GSE49570.REST.CD4 164 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 96 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 175 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 175 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 63 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 63 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 130 bp overlap
RNF2 1 dataset
ChIP WA01 ENCSR784VUY.RNF2.WA01 175 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 175 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 111 bp overlap
SUZ12 5 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 131 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 105 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 128 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 114 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 175 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 96 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 90 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 175 bp overlap