chr13 : 48,594,313 48,594,741
428 bp 46 TFs 1 linked gene
This 428 bp open chromatin element is linked to LINC00462 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00462 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:48,589,313 – 48,599,741
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 173 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 415 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 415 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 139 bp overlap
BACH2 1 dataset
ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 131 bp overlap
BATF 2 datasets
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 74 bp overlap
ChIP OCI-Ly3 GSE56857.BATF.OCI-Ly3 68 bp overlap
BRD4 8 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 256 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 73 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 428 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 110 bp overlap
ChIP P493-6_MYC_1H GSE42262.BRD4.P493-6_MYC_1H 135 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 107 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 53 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 181 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 87 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 74 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 266 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap
IRF4 4 datasets
ChIP B-cell GSE142493.IRF4.B-cell 91 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 141 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 175 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 152 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 386 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 423 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 314 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 408 bp overlap
JUND 1 dataset
ChIP GM12878 ENCSR000EYV.JUND.GM12878 54 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 127 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 55 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 203 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 116 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 126 bp overlap
ChIP hESC GSE18292.NANOG.hESC 64 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 85 bp overlap
POLR2A 5 datasets
ChIP GM18505 ENCFF311CYB 390 bp overlap
ChIP GM18526 ENCFF599EPS 299 bp overlap
ChIP GM18951 ENCFF079KKO 352 bp overlap
ChIP GM19193 ENCFF599VTO 370 bp overlap
ChIP GM19193 ENCFF599VTO 384 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 2 datasets
ChIP GM12891 ENCFF166YPP 152 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 77 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 93 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 149 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 172 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 83 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 98 bp overlap
PPARG 2 datasets
ChIP ASC GSE21366.PPARG.ASC 170 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 169 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 392 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 99 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 318 bp overlap
RELA 3 datasets
ChIP GM12878 ENCSR000EAG.RELA.GM12878 61 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 146 bp overlap
ChIP SGBS GSE64233.RELA.SGBS 83 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 428 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 403 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 409 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 374 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 91 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 154 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 308 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 155 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 94 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 101 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 93 bp overlap
SOX2 2 datasets
ChIP OSK GSE81899.SOX2.OSK 89 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 82 bp overlap
STAT3 3 datasets
ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 97 bp overlap
ChIP TMD8 GSE106844.STAT3.TMD8 100 bp overlap
ChIP TMD8_DMSO GSE123398.STAT3.TMD8_DMSO 121 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCFF658WIO 137 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 64 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 424 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 120 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 249 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap