chr12 : 102,825,073 102,825,376
303 bp 25 TFs 1 linked gene
This 303 bp open chromatin element is linked to LINC00485 and is bound by 25 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00485 674 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:102,820,073 – 102,830,376
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE43720.AR.LNCaP 76 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 117 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 259 bp overlap
CREB3 1 dataset
ChIP HepG2 ENCFF847HIL 139 bp overlap
CTCF 3 datasets
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 241 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 116 bp overlap
ChIP neural progenitor cell ENCFF420RBO 145 bp overlap
EHMT2 1 dataset
ChIP HepG2 ENCFF004KYI 125 bp overlap
ESR1 1 dataset
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 168 bp overlap
ETS1 1 dataset
ChIP HepG2 ENCFF890RRF 185 bp overlap
EZH2 4 datasets
ChIP A673 ENCFF955JRZ 66 bp overlap
ChIP neural progenitor cell ENCFF472NFV 289 bp overlap
ChIP neural progenitor cell ENCFF472NFV 303 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 223 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 91 bp overlap
JUND 1 dataset
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 207 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 162 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 54 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 118 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 199 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 303 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
REST 15 datasets
ChIP A-549 ENCSR000BQP.REST.A-549 63 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 94 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 133 bp overlap
ChIP H1 ENCFF429RUE 192 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 193 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 303 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 303 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 98 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 103 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 303 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 279 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 303 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 192 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 127 bp overlap
ChIP liver ENCSR893QWP.REST.liver 303 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 286 bp overlap
SNAPC4 1 dataset
ChIP HepG2 ENCFF536CFY 156 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 216 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 150 bp overlap
ZNF800 1 dataset
ChIP HepG2 ENCFF840FYM 192 bp overlap