chr1 : 210,416,064 – 210,416,394
330 bp 31 TFs 0 linked genes
This 330 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:210,411,064 – 210,421,394
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.AR.22Rv1_shKDM3A 134 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 224 bp overlap
BRD4 1 dataset
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 152 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 225 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 228 bp overlap
CTCF 116 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 230 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 194 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 330 bp overlap
ChIP A673 ENCFF123WOM 330 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG04450 ENCFF116DJL 273 bp overlap
ChIP AG10803 ENCFF549AQK 214 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 195 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 268 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 131 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 96 bp overlap
ChIP GM12873 ENCFF711LOS 179 bp overlap
ChIP GM23338 ENCFF531QOI 330 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 237 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 330 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 293 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 330 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 270 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 330 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 330 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 330 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 303 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 330 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 330 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 323 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 330 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 278 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 240 bp overlap
ChIP HFFc6 ENCFF005CJI 330 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 240 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 240 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 324 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 229 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 291 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 253 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 229 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 297 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 213 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP IMR-90 ENCFF887MRH 245 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 209 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 251 bp overlap
ChIP IMR-90_siRNA GSE125639.CTCF.IMR-90_siRNA 222 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 290 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 253 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 244 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 231 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 112 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 327 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 179 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 189 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 256 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 163 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 285 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 312 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 225 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 261 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 263 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 330 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 296 bp overlap
ChIP chondrocyte ENCFF134ORZ 319 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 217 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 275 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 215 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 245 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 330 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 292 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 227 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF641PIN 318 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 330 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 208 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 304 bp overlap
ChIP endodermal cell ENCFF471YCZ 199 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 311 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 192 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 291 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 237 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 232 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 171 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 279 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 254 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 269 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 330 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 163 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 148 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 165 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 239 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 159 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 202 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 183 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 233 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 192 bp overlap
ChIP islet ERP004003.CTCF.islet 191 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 277 bp overlap
ChIP myotube ENCFF981UHL 330 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 330 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 330 bp overlap
ChIP neural cell ENCFF335ADI 263 bp overlap
ChIP neural progenitor cell ENCFF420RBO 330 bp overlap
ChIP neural progenitor cell ENCFF581WPG 330 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 212 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 137 bp overlap
ChIP osteocyte ENCFF929FPD 330 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 321 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 244 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 330 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 270 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 330 bp overlap
ESR1 1 dataset
ChIP T-47D GSE148277.ESR1.T-47D 210 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 301 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 194 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 158 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 175 bp overlap
MED1 1 dataset
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 141 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 202 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 205 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 330 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 194 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 178 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 279 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 249 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 278 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 298 bp overlap
RAD21 14 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 328 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 273 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 270 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 118 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 117 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 226 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 219 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 165 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 170 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 231 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 177 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 246 bp overlap
ChIP neural cell ENCFF564MOT 330 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 245 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 223 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 208 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 177 bp overlap
SMC1 2 datasets
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 227 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 330 bp overlap
SMC3 6 datasets
ChIP HeLa GSE126990.SMC3.HeLa 218 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 218 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 218 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 220 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 260 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 269 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 330 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 330 bp overlap
TBP 2 datasets
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 157 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 139 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
YAP1 1 dataset
ChIP H69 GSE62274.YAP1.H69 135 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 235 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 306 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 295 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 189 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 74 bp overlap
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