chr12 : 16,608,013 – 16,608,784
771 bp 40 TFs 1 linked gene
This 771 bp open chromatin element is linked to LMO3 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LMO3 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:16,603,013 – 16,613,784
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ATF2 2 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 339 bp overlap
ChIP HepG2 ENCFF955VER 381 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 517 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 329 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCFF010ZUU 295 bp overlap
BRD4 10 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 82 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 214 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 335 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 216 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 157 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 407 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 269 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 605 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 435 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 302 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 98 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 278 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 333 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 364 bp overlap
ChIP keratinocyte ENCFF070STK 348 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 253 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 184 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 161 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 350 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 244 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 403 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 400 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 403 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 528 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 544 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 539 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 402 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 580 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 597 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 289 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 531 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 399 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 384 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 535 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 532 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 186 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 306 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 55 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE94782.MYCN.NB-1643 161 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 208 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 124 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 182 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 191 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 194 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 172 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 188 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 528 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 229 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 526 bp overlap
POLR2A 16 datasets
ChIP body of pancreas ENCFF501FEC 254 bp overlap
ChIP body of pancreas ENCFF675RCN 229 bp overlap
ChIP body of pancreas ENCFF727UBE 230 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 146 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 259 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 285 bp overlap
ChIP sigmoid colon ENCFF101ILL 81 bp overlap
ChIP sigmoid colon ENCFF653CQA 338 bp overlap
ChIP sigmoid colon ENCFF661AMI 193 bp overlap
ChIP sigmoid colon ENCFF725QFT 237 bp overlap
ChIP sigmoid colon ENCFF748YVT 238 bp overlap
ChIP sigmoid colon ENCFF754JQR 217 bp overlap
ChIP thyroid gland ENCFF979LRR 207 bp overlap
ChIP transverse colon ENCFF607LKE 280 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 119 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 256 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 278 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 148 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 443 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 393 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 135 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 771 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 255 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 324 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 371 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 392 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 262 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 368 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 187 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 146 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 106 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 563 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 162 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 264 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 239 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 138 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 215 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 174 bp overlap
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