chr12 : 6,269,147 – 6,269,392

245 bp 55 TFs 0 linked genes

This 245 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 116 bp overlap

BRD4 1 dataset

ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 78 bp overlap

CTCF 2 datasets

Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap

Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF346MCV 220 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 81 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 241 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 111 bp overlap

HOXC10 1 dataset

Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap

HOXC9 1 dataset

Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap

HOXD10 1 dataset

Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap

Hmx1 1 dataset

Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap

IRF2 2 datasets

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

Motif DE_24h DE_24h-IRF2_MA0051.2 16 bp overlap

JUN 1 dataset

ChIP DE_D1 S40-DE-d1-JUN-exp2 213 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

MEIS1 3 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap

Msgn1 2 datasets

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

Motif DE_24h DE_24h-Msgn1_MA1524.3 10 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 245 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 232 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 245 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 245 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 245 bp overlap

ChIP hESC GSE18292.NANOG.hESC 152 bp overlap

NCAPH2 1 dataset

ChIP RMG-I GSE120058.NCAPH2.RMG-I 224 bp overlap

NCOR1 1 dataset

ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

POLR2A 1 dataset

ChIP thyroid gland ENCFF979LRR 57 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 14 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap

ChIP GM23338 ENCFF333SNB 210 bp overlap

ChIP H1 ENCFF698ZAP 186 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 245 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 245 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 245 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 162 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 169 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 204 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 141 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 245 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 245 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 203 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 143 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 245 bp overlap

PRDM1 1 dataset

Motif DE_24h DE_24h-PRDM1_MA0508.4 7 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif DE_24h DE_24h-Pou5f1Sox2_MA0142.1 15 bp overlap

Pparg::Rxra 1 dataset

Motif DE_24h DE_24h-PpargRxra_MA0065.3 13 bp overlap

RUNX3 1 dataset

Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap

SCRT1 1 dataset

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 214 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 245 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 184 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 224 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 245 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 201 bp overlap

SNAI2 1 dataset

Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 245 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 245 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 159 bp overlap

U2AF2 1 dataset

ChIP Hep-G2 GSE120104.U2AF2.Hep-G2 169 bp overlap

YY1 4 datasets

ChIP H1 ENCFF524BTL 233 bp overlap

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 119 bp overlap

ChIP NT2/D1 ENCFF999MII 225 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 159 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZFP42 2 datasets

Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap

Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap

ZKSCAN3 2 datasets

Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap

Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 116 bp overlap

ZNF22 1 dataset

ChIP HEK293 GSE76494.ZNF22.HEK293 190 bp overlap

ZNF282 1 dataset

Motif DE_24h DE_24h-ZNF282_MA1154.2 15 bp overlap

ZNF549 2 datasets

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap

ZNF667 2 datasets

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap