chr11 : 134,060,382 – 134,060,679
297 bp 40 TFs 1 linked gene
This 297 bp open chromatin element is linked to JAM3 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
JAM3 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:134,055,382 – 134,065,679
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 171 bp overlap
CEBPA 2 datasets
ChIP SKH1_CEBPA-ER_E2 GSE102697.CEBPA.SKH1_CEBPA-ER_E2 172 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.CEBPA.SKH1_RUNX1-EVI1_KD 197 bp overlap
CTCF 2 datasets
ChIP Kasumi-1_siRE GSE121280.CTCF.Kasumi-1_siRE 146 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 182 bp overlap
ERG 6 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 209 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 297 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 297 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 273 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 297 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 268 bp overlap
ESR1 1 dataset
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 98 bp overlap
ETS1 7 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 296 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 240 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 174 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 273 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 240 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 274 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 174 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 297 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 297 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 261 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 245 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 297 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 252 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 297 bp overlap
GATA1 2 datasets
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 191 bp overlap
GATA2 11 datasets
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 285 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.GATA2.HUVEC-C_VEGF_12h 216 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.GATA2.HUVEC-C_VEGF_4h 297 bp overlap
ChIP ME-1 GSE46044.GATA2.ME-1 236 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 163 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 297 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 297 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 297 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 297 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 275 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 278 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 216 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 254 bp overlap
ChIP DE DE-GATA4-2 297 bp overlap
ChIP foregut GSE117136.GATA4.foregut 297 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 297 bp overlap
ChIP DE DE-GATA6-2 297 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 230 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 297 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 273 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 222 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 292 bp overlap
ChIP foregut GSE117136.GATA6.foregut 297 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 224 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 244 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 248 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 253 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 173 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 179 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 258 bp overlap
LYL1 2 datasets
ChIP Kasumi-1 GSE63484.LYL1.Kasumi-1 186 bp overlap
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 262 bp overlap
MECOM 2 datasets
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 250 bp overlap
ChIP SKH1_E2 GSE102697.MECOM.SKH1_E2 267 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 297 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 297 bp overlap
MYC 1 dataset
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 78 bp overlap
RNF2 2 datasets
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 297 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 297 bp overlap
RUNX1 10 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 297 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 297 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 297 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 297 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 297 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 297 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 297 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 297 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 86 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 146 bp overlap
RUNX1T1 3 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 297 bp overlap
ChIP Kasumi-1_shControl-AE GSE115115.RUNX1T1.Kasumi-1_shControl-AE 297 bp overlap
ChIP Kasumi-1_shTAF1-AE GSE115115.RUNX1T1.Kasumi-1_shTAF1-AE 287 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 297 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 257 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 297 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 297 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 297 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 252 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 297 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 164 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 240 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 250 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 297 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 133 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 213 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 265 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 279 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
TAL1 3 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 276 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 297 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 297 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 187 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 297 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 191 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 188 bp overlap
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