Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

53 transcription factors

AR 1 dataset

ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 100 bp overlap

ARGFX 1 dataset

Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 287 bp overlap

Alx4 1 dataset

Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap

Arx 1 dataset

Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap

CHD7 1 dataset

ChIP H1 ENCFF126NLU 220 bp overlap

DLX1 1 dataset

Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 242 bp overlap

FOXA1 13 datasets

ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 301 bp overlap

ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 183 bp overlap

ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 230 bp overlap

ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 227 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 254 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 307 bp overlap

ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 172 bp overlap

ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 236 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 284 bp overlap

ChIP ZR751 GSE72249.FOXA1.ZR751 249 bp overlap

ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 229 bp overlap

ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 230 bp overlap

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 125 bp overlap

GATA3_Nter 1 dataset

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 188 bp overlap

GATA4 1 dataset

Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap

GATA6 5 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 297 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 363 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 214 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 334 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 391 bp overlap

GBX2 1 dataset

Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap

LBX2 1 dataset

Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap

MEIS1 2 datasets

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap

MEIS3 1 dataset

Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap

MGA::EVX1 1 dataset

Motif ES_0h ES_0h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 188 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 178 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 76 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 553 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 553 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 553 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 553 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 553 bp overlap

ChIP hESC GSE18292.NANOG.hESC 55 bp overlap

ChIP hESC GSE18292.NANOG.hESC 96 bp overlap

Nobox 1 dataset

Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap

PAX6 1 dataset

Motif ES_0h ES_0h-PAX6_MA0069.1 14 bp overlap

POU5F1 10 datasets

ChIP GM23338 ENCFF333SNB 302 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 553 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 326 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 553 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 330 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 221 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 84 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 553 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 553 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 312 bp overlap

PRDM9 1 dataset

Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap

RAX 1 dataset

Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap

Runx1 1 dataset

Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap

SMARCA4 3 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 553 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 339 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 133 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 513 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 548 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 553 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 553 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 553 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 151 bp overlap

SP4 1 dataset

Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 234 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 364 bp overlap

TP53 2 datasets

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 53 bp overlap

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 189 bp overlap

VENTX 1 dataset

Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap

YY1 2 datasets

ChIP H1 ENCFF524BTL 216 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 160 bp overlap

ZNF263 1 dataset

Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap

ZNF354A 1 dataset

Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap

ZNF460 1 dataset

Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 553 bp overlap

Genome Browser