chr9 : 116,998,389 116,998,552
163 bp 55 TFs 0 linked genes
This 163 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:116,993,389 – 117,003,552
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 163 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 152 bp overlap
AR 2 datasets
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 163 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 121 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 113 bp overlap
BRD4 1 dataset
ChIP MV4-11_IBET GSE71776.BRD4.MV4-11_IBET 155 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 114 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 146 bp overlap
EHMT2 3 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 163 bp overlap
ChIP HepG2 ENCFF004KYI 146 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 163 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 57 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOSL2 1 dataset
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
FOXA1 4 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 152 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 135 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 138 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 119 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 163 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 127 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 115 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 151 bp overlap
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 85 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 120 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 120 bp overlap
MEIS1 5 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 163 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NRL 2 datasets
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
REST 73 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 163 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 163 bp overlap
ChIP A549 ENCFF148AIS 163 bp overlap
ChIP A549 ENCFF148AIS 131 bp overlap
ChIP CD4 GSE49570.REST.CD4 163 bp overlap
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
ChIP GM12878 ENCFF235NGC 163 bp overlap
ChIP GM12878 ENCFF943QPB 163 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 163 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 163 bp overlap
ChIP GM23338 ENCFF024TCL 163 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 163 bp overlap
ChIP GP5D GSE51234.REST.GP5D 163 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 163 bp overlap
ChIP H1 ENCFF203SWY 163 bp overlap
ChIP H1 ENCFF429RUE 163 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 163 bp overlap
ChIP HCT116 ENCFF929AYY 161 bp overlap
ChIP HEK293 ENCFF073DOT 163 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 163 bp overlap
ChIP HL-60 ENCFF589LOF 163 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 163 bp overlap
ChIP HeLa-S3 ENCFF911DTC 163 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 163 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 163 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 163 bp overlap
ChIP HepG2 ENCFF122AWR 163 bp overlap
ChIP HepG2 ENCFF800JSL 163 bp overlap
ChIP Ishikawa ENCFF456OHV 163 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 163 bp overlap
ChIP K-562 GSE70482.REST.K-562 163 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 163 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 163 bp overlap
ChIP K562 ENCFF430APM 137 bp overlap
ChIP K562 ENCFF685YZN 163 bp overlap
ChIP K562 ENCFF688UKW 163 bp overlap
ChIP K562 ENCFF758CZL 163 bp overlap
ChIP K562 ENCFF758CZL 163 bp overlap
ChIP MCF-7 ENCFF893RRD 163 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 163 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 163 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 163 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 163 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 163 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 156 bp overlap
ChIP PFSK-1 ENCFF668WMP 163 bp overlap
ChIP PFSK-1 ENCFF845VHA 163 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 163 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 163 bp overlap
ChIP Panc1 ENCFF338WSQ 163 bp overlap
ChIP Panc1 ENCFF518EEQ 120 bp overlap
ChIP Panc1 ENCFF629OJO 163 bp overlap
ChIP SK-N-SH ENCFF635KBN 163 bp overlap
ChIP SK-N-SH ENCFF861MKH 157 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 163 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 163 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 163 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 163 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 163 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 163 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 163 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 163 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 163 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 163 bp overlap
ChIP liver ENCFF240FWT 163 bp overlap
ChIP liver ENCFF577AZT 163 bp overlap
ChIP liver ENCSR893QWP.REST.liver 163 bp overlap
ChIP liver ENCSR867WPH.REST.liver 163 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 163 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 74 bp overlap
ChIP neural ENCSR000BTV.REST.neural 163 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 155 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 163 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 163 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 163 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 163 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 163 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 163 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 163 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 163 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 163 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 163 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 153 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 69 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 163 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TEAD4 2 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 163 bp overlap
ChIP A549 ENCFF243FTL 163 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 124 bp overlap
TP53 1 dataset
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
TP63 1 dataset
Motif DE_12h DE_12h-TP63_MA0525.2 18 bp overlap
TP73 1 dataset
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZNF143 4 datasets
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 163 bp overlap
ChIP GM12878 ENCSR000DZL.ZNF143.GM12878 110 bp overlap
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 111 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 156 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap