chr9 : 99,998,336 99,998,689
353 bp 44 TFs 1 linked gene
This 353 bp open chromatin element is linked to UPF3AP3 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
UPF3AP3 379 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:99,993,336 – 100,003,689
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 153 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 162 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 151 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 228 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 332 bp overlap
ChIP BLaER1 ENCFF274GAT 218 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 353 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 301 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 189 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 198 bp overlap
FOXA1 1 dataset
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 111 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 118 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 353 bp overlap
ChIP DE DE-GATA4-2 249 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 295 bp overlap
ChIP DE DE-GATA6-2 353 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 304 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 189 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 350 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 59 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 131 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 90 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 197 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 147 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 148 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 133 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 163 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 124 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 240 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 236 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 229 bp overlap
RBM22 3 datasets
ChIP K-562 GSE120104.RBM22.K-562 245 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 245 bp overlap
ChIP K562 ENCFF629OUL 319 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 241 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 124 bp overlap
SETDB1 2 datasets
ChIP K-562 ENCSR000EWI.SETDB1.K-562 247 bp overlap
ChIP K562 ENCFF745PAW 337 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 238 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 327 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 301 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 127 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 197 bp overlap
STAT1 1 dataset
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 171 bp overlap
SUZ12 1 dataset
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 229 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 167 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 210 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 158 bp overlap