chr9 : 92,291,101 – 92,291,894
793 bp 54 TFs 1 linked gene
This 793 bp open chromatin element is linked to IARS1 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
IARS1 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:92,286,101 – 92,296,894
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 1 dataset
ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 248 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 203 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 135 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 345 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 261 bp overlap
ChIP K562 ENCFF673OEZ 116 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 109 bp overlap
CTCF 1 dataset
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 501 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 146 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 151 bp overlap
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
FEZF2 3 datasets
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 336 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 793 bp overlap
ChIP DE DE-FOXA2-2 793 bp overlap
GATA1 7 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 112 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 134 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 103 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 208 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 176 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000BKM.GATA2.K-562 125 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 793 bp overlap
ChIP DE DE-GATA4-2 793 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 793 bp overlap
ChIP foregut GSE117136.GATA4.foregut 585 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 334 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 394 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 283 bp overlap
ChIP DE DE-GATA6-1 793 bp overlap
ChIP DE DE-GATA6-2 793 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 329 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 737 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 390 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 217 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 322 bp overlap
ChIP foregut GSE117136.GATA6.foregut 377 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 190 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
IRF6 1 dataset
Motif DE_72h DE_72h-IRF6_MA1509.1 9 bp overlap
KMT2A 2 datasets
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 298 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 256 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 134 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 65 bp overlap
MEN1 1 dataset
ChIP MCF-7 GSE85317.MEN1.MCF-7 468 bp overlap
MYB 1 dataset
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 310 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 203 bp overlap
POLR2A 2 datasets
ChIP HeLa-S3 ENCFF045HUU 315 bp overlap
ChIP K562 ENCFF514URW 276 bp overlap
POU4F2 1 dataset
Motif DE_72h DE_72h-POU4F2_MA0683.2 15 bp overlap
POU6F2 1 dataset
Motif DE_72h DE_72h-POU6F2_MA0793.2 9 bp overlap
RBFOX2 7 datasets
ChIP HepG2 ENCFF554DMZ 447 bp overlap
ChIP HepG2 ENCFF554DMZ 662 bp overlap
ChIP HepG2 ENCFF939HTZ 447 bp overlap
ChIP HepG2 ENCFF939HTZ 656 bp overlap
ChIP K562 ENCFF196WTG 747 bp overlap
ChIP K562 ENCFF196WTG 195 bp overlap
ChIP K562 ENCFF967GRF 538 bp overlap
SATB1 1 dataset
Motif DE_72h DE_72h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 309 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 295 bp overlap
SMAD3 2 datasets
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 253 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 284 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 70 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 203 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
STAT1_pS727 2 datasets
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 252 bp overlap
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 105 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 216 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 196 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 227 bp overlap
TAL1 8 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 354 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 259 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 143 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 212 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 160 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 187 bp overlap
ChIP K562 ENCFF620GMX 371 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 213 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TCF12 1 dataset
ChIP K562 ENCFF931DJY 328 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 357 bp overlap
TP63 6 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 190 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 82 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 136 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 116 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 128 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 183 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZKSCAN1 4 datasets
Motif DE_72h DE_72h-ZKSCAN1_MA1585.2 9 bp overlap
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 271 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 237 bp overlap
ChIP K562 ENCFF977CBA 297 bp overlap
ZNF410 1 dataset
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF582 1 dataset
Motif DE_72h DE_72h-ZNF582_MA1983.2 19 bp overlap
ZNF770 1 dataset
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
Huangfu Lab · Publications · Resources · Contact