chr9 : 24,035,900 – 24,036,874

974 bp 67 TFs 0 linked genes

This 974 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

67 transcription factors

ARID1A 2 datasets

ChIP NGP GSE134626.ARID1A.NGP 499 bp overlap

ChIP NGP GSE134626.ARID1A.NGP 328 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BRD4 3 datasets

ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 284 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 159 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 154 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CTCF 2 datasets

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 221 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

EN2 1 dataset

Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap

ERF::FIGLA 1 dataset

Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV6 1 dataset

Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap

ETV7 1 dataset

Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

GBX1 1 dataset

Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

JUN 2 datasets

ChIP ESC S24-ESC-d0-JUN-exp1 410 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 414 bp overlap

KDM1A 1 dataset

ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 72 bp overlap

KLF17 1 dataset

Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

KMT2A 1 dataset

ChIP MV4-11 GSE79899.KMT2A.MV4-11 233 bp overlap

LBX1 1 dataset

Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

MAX 2 datasets

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 168 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 225 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MYC 1 dataset

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 197 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 6 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 165 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 805 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 697 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 553 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 128 bp overlap

ChIP hESC GSE18292.NANOG.hESC 126 bp overlap

NEUROD1 5 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 466 bp overlap

ChIP D283-Med GSE92582.NEUROD1.D283-Med 280 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 252 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 346 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 271 bp overlap

NFATC4 1 dataset

Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU5F1 5 datasets

ChIP GM23338 ENCFF333SNB 212 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 806 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 150 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 148 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 547 bp overlap

PRRX2 1 dataset

Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 2 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 336 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 203 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RORB 1 dataset

Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap

RORC 1 dataset

Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap

SMAD1 1 dataset

ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 239 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE21614.SMAD3.BG03 104 bp overlap

ChIP BG03 GSE21614.SMAD3.BG03 220 bp overlap

SMARCA4 4 datasets

ChIP NGP GSE134626.SMARCA4.NGP 196 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 777 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 248 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 294 bp overlap

SMARCA5 1 dataset

ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 57 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 388 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 298 bp overlap

SMARCC1 5 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 359 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 189 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 210 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 301 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 386 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 211 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 135 bp overlap

SPI1 3 datasets

ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 109 bp overlap

ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 91 bp overlap

ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 75 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

TCF4 1 dataset

Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 417 bp overlap

ZEB1 2 datasets

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 181 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap