chr1 : 175,832,535 175,832,778
243 bp 60 TFs 0 linked genes
This 243 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:175,827,535 – 175,837,778
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 237 bp overlap
Crx 1 dataset
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 235 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 221 bp overlap
ChIP DE DE-GATA6-2 240 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 243 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 243 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 243 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 243 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 242 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 243 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 201 bp overlap
GSC 1 dataset
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 162 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 129 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 243 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 243 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 243 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 243 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 155 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 243 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 243 bp overlap
ChIP H1 ENCFF621PNP 189 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 235 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 192 bp overlap
ChIP H1 ENCFF468JZD 143 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 128 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 237 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 233 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 243 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 243 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 243 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 193 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 190 bp overlap
Nr5A2 1 dataset
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 243 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 235 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 212 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 180 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 243 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RHOXF1 1 dataset
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 167 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 243 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 194 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 243 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 243 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 243 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 243 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 243 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 243 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 214 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 199 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 177 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 179 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 175 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 193 bp overlap
SNAI1 1 dataset
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 243 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 177 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 243 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 117 bp overlap
TBX5 1 dataset
Motif ES_0h ES_0h-TBX5_MA0807.1 8 bp overlap
TCF12 3 datasets
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 224 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 145 bp overlap
TCF3 2 datasets
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 211 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
Tbx6 1 dataset
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 218 bp overlap
ZNF135 2 datasets
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF331 2 datasets
ChIP GM23338 ENCFF410NSZ 152 bp overlap
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 161 bp overlap
ZNF416 1 dataset
Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 243 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 216 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF770 1 dataset
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap