chr9 : 21,966,199 21,966,526
327 bp 38 TFs 1 linked gene
This 327 bp open chromatin element is linked to CDKN2A and is bound by 38 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDKN2A 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:21,961,199 – 21,971,526
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 184 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 239 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 273 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 305 bp overlap
BRD4 4 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 182 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 327 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 243 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 271 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 327 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 207 bp overlap
CTCF 1 dataset
ChIP keratinocyte GSE154221.CTCF.keratinocyte 162 bp overlap
EGR1 1 dataset
ChIP H1 ENCFF451BLH 169 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF886DXX 327 bp overlap
ChIP H1 ENCFF232NZA 327 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 327 bp overlap
ChIP fibroblast of lung ENCFF479BAW 170 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 246 bp overlap
ChIP neural cell ENCFF610EPB 50 bp overlap
ChIP neural progenitor cell ENCFF018MKA 327 bp overlap
ChIP neural progenitor cell ENCFF472NFV 327 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 105 bp overlap
HMGA1 1 dataset
ChIP IMR-90_ctrl GSE111841.HMGA1.IMR-90_ctrl 55 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 249 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 327 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 199 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 122 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 140 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 263 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 327 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_shNR3C1_Veh_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_Veh_IA1 255 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 327 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 291 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 327 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 51 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 145 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 65 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 115 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 327 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 325 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 138 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 76 bp overlap
SUPT5H 2 datasets
ChIP HeLa GSE125534.SUPT5H.HeLa 84 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 237 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF507HGF 253 bp overlap
ChIP H1 ENCFF881NFR 327 bp overlap
ChIP NT2/D1 ENCFF574SXS 327 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
TCF12 3 datasets
ChIP H1 ENCFF203EBH 214 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 130 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 96 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 240 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 161 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 327 bp overlap