Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

47 transcription factors

AR 3 datasets

ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 219 bp overlap

ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 152 bp overlap

ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 124 bp overlap

CDX2 1 dataset

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 273 bp overlap

FOXA1 9 datasets

ChIP LNCaP GSE64656.FOXA1.LNCaP 320 bp overlap

ChIP LNCaP GSE52725.FOXA1.LNCaP 138 bp overlap

ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 203 bp overlap

ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 204 bp overlap

ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 221 bp overlap

ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 247 bp overlap

ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap

ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 187 bp overlap

ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 251 bp overlap

FOXA2 3 datasets

ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 320 bp overlap

ChIP DE DE-FOXA2-1 320 bp overlap

ChIP DE DE-FOXA2-2 320 bp overlap

GATA4 3 datasets

ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 62 bp overlap

ChIP DE DE-GATA4-1 174 bp overlap

ChIP DE DE-GATA4-2 153 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 68 bp overlap

ChIP DE DE-GATA6-2 320 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 239 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 261 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 320 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 320 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HNF1A 1 dataset

Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap

HOXB13 1 dataset

ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 190 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap

MGA 1 dataset

Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap

NANOG 9 datasets

ChIP GM23338 ENCFF065NZG 254 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 158 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 320 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 296 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 320 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 320 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 284 bp overlap

ChIP hESC GSE18292.NANOG.hESC 298 bp overlap

ChIP hESC GSE20650.NANOG.hESC 233 bp overlap

PBX2 1 dataset

Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU4F3 1 dataset

Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap

POU5F1 9 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 315 bp overlap

ChIP OSKM GSE81899.POU5F1.OSKM 172 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 231 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 169 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 282 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 320 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 320 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 251 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 194 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RELA 1 dataset

ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 147 bp overlap

RFX1 1 dataset

Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap

RFX3 1 dataset

Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap

Rfx6 1 dataset

Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 320 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 320 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 320 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 279 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 320 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 320 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 320 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 264 bp overlap

SMARCA4 2 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 320 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 226 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 320 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 208 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 165 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 320 bp overlap

SREBF1 1 dataset

Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap

SREBF2 1 dataset

Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap

TBP 1 dataset

Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap

TLE3 2 datasets

ChIP LNCaP GSE94682.TLE3.LNCaP 232 bp overlap

ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 188 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 320 bp overlap

Tbx6 1 dataset

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Genome Browser