chr9 : 1,047,595 – 1,047,729

134 bp 57 TFs 3 linked genes

This 134 bp open chromatin element is linked to LINC01230, DMRT2, and ENSG00000286684 and is bound by 57 transcription factors.

Linked Genes

3 genes

Gene	Dist. to TSS	Distance	Link type
LINC01230	2.0 kb	Proximal	Proximity
DMRT2	2.6 kb	Proximal	Proximity
ENSG00000286684	5.0 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

57 transcription factors

ATF7 1 dataset

ChIP GM12878 ENCSR014YCR.ATF7.GM12878 78 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCL6B 1 dataset

Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap

BHLHE40 2 datasets

ChIP GM12878 ENCFF521IZR 68 bp overlap

ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 65 bp overlap

BRD4 1 dataset

ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 121 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

ELF3 2 datasets

ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 134 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 134 bp overlap

EZH2 7 datasets

ChIP B-cell ENCSR000AUZ.EZH2.B-cell 134 bp overlap

ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 134 bp overlap

ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 134 bp overlap

ChIP endothelial cell of umbilical vein ENCFF539AKL 134 bp overlap

ChIP keratinocyte ENCFF070STK 134 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HDAC2 2 datasets

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 88 bp overlap

ChIP RH4_Entinostat-6H_bioMerck GSE116344.HDAC2.RH4_Entinostat-6H_bioMerck 90 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA5 1 dataset

Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

IKZF1 2 datasets

ChIP GM12878 ENCFF824TGK 134 bp overlap

ChIP GM12878 ENCFF824TGK 99 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 115 bp overlap

KDM1A 1 dataset

ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 109 bp overlap

KLF6 1 dataset

ChIP PDAC GSE64557.KLF6.PDAC 134 bp overlap

KMT2A 1 dataset

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 134 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 134 bp overlap

MYC 1 dataset

ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 95 bp overlap

MYOD1 1 dataset

ChIP myoblast GSE50413.MYOD1.myoblast 52 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 134 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

ONECUT2 1 dataset

ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 105 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 100 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 64 bp overlap

RAD21 1 dataset

ChIP RH4 GSE83726.RAD21.RH4 85 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RELB 1 dataset

ChIP GM12878 ENCSR387QUV.RELB.GM12878 108 bp overlap

SMARCA4 2 datasets

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 134 bp overlap

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 134 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 134 bp overlap

SS18-SSX 1 dataset

ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 134 bp overlap

STAT3 6 datasets

ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 134 bp overlap

ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 134 bp overlap

ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 87 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 134 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 134 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 134 bp overlap

SUZ12 1 dataset

ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 134 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap

Stat6 1 dataset

Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF687 2 datasets

ChIP GM12878 ENCFF233SGE 100 bp overlap

ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 96 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap