chr9 : 1,046,106 1,046,417
311 bp 34 TFs 3 linked genes
This 311 bp open chromatin element is linked to LINC01230, ENSG00000286684, and DMRT2 and is bound by 34 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
LINC01230 482 bp At TSS Proximity
ENSG00000286684 3.5 kb Proximal Proximity
DMRT2 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:1,041,106 – 1,051,417
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 311 bp overlap
BRD4 3 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 252 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 99 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 141 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 73 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 133 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 59 bp overlap
EZH2 14 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 311 bp overlap
ChIP GM23338 ENCFF613YON 311 bp overlap
ChIP GM23338 ENCFF886DXX 210 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 281 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 143 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 311 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 85 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 311 bp overlap
ChIP SK-N-SH ENCFF657FZK 69 bp overlap
ChIP astrocyte ENCFF365JTP 187 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 311 bp overlap
ChIP hESC GSE113817.EZH2.hESC 269 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 210 bp overlap
ChIP keratinocyte ENCFF070STK 70 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 311 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 247 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 311 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 311 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 311 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 311 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 159 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 83 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 70 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 311 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 258 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 285 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 250 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 311 bp overlap
RBM39 2 datasets
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 77 bp overlap
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 77 bp overlap
RNF2 2 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 70 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 311 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 298 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 311 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 311 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 311 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 311 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 311 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 240 bp overlap
SUZ12 5 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 311 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 311 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 311 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 289 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 205 bp overlap
TAF15 1 dataset
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 184 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 161 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 302 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 222 bp overlap
ZNF524 1 dataset
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap