chr6 : 110,327,945 110,328,276
331 bp 39 TFs 0 linked genes
This 331 bp open chromatin element has no linked target genes and is bound by 39 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:110,322,945 – 110,333,276
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 146 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 84 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 78 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 300 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 288 bp overlap
CREB5 1 dataset
ChIP SK-N-SH ENCFF144PMI 60 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 331 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 212 bp overlap
ChIP BLaER1 ENCFF274GAT 292 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF451CNG 68 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 50 bp overlap
EZH2 1 dataset
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 205 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 61 bp overlap
ChIP DE DE-FOXA2-1 323 bp overlap
ChIP DE DE-FOXA2-2 331 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 74 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 103 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 331 bp overlap
ChIP DE DE-GATA4-2 331 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 116 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 254 bp overlap
ChIP DE DE-GATA6-2 331 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 207 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 331 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 261 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 172 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 103 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 90 bp overlap
MAX 3 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 50 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 140 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 216 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 270 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 171 bp overlap
NR3C1 1 dataset
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.NR3C1.HeLa-B2_GRKD_TA_TNFA 77 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 53 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 198 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 99 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 171 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 267 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 246 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 205 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 149 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 273 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 226 bp overlap
SMARCA4 7 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 331 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 240 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 277 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 71 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 69 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 84 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 112 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 291 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 176 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 151 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 98 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 155 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 230 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 173 bp overlap
SS18 6 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 331 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 173 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 139 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 317 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 255 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 262 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCFF754TJT 77 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH ENCFF182EBB 193 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 110 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 155 bp overlap