chr1 : 107,066,344 107,066,882
538 bp 40 TFs 1 linked gene
This 538 bp open chromatin element is linked to PRMT6 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRMT6 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:107,061,344 – 107,071,882
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AHR 3 datasets
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 147 bp overlap
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 189 bp overlap
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 232 bp overlap
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 371 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 301 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 206 bp overlap
CBX1 2 datasets
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 162 bp overlap
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 114 bp overlap
EP300 1 dataset
ChIP MCF-7_DMSO GSE29073.EP300.MCF-7_DMSO 199 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 116 bp overlap
ESR1 22 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 368 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 172 bp overlap
ChIP MCF-7 GSE68356.ESR1.MCF-7 504 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 235 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 150 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 116 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 151 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 186 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 219 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 194 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 65 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 200 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 222 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 435 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 111 bp overlap
ChIP MCF-7_WT GSE136302.ESR1.MCF-7_WT 189 bp overlap
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 467 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 207 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 212 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 188 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 178 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 160 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 251 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 263 bp overlap
ESR1_Y537S 3 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 228 bp overlap
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 230 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 398 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 538 bp overlap
FOXA1 3 datasets
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 164 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 184 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 315 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 296 bp overlap
ChIP DE DE-FOXA2-1 278 bp overlap
ChIP DE DE-FOXA2-2 312 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 289 bp overlap
ChIP DE DE-GATA4-1 394 bp overlap
ChIP DE DE-GATA4-2 442 bp overlap
ChIP foregut GSE117136.GATA4.foregut 288 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 271 bp overlap
ChIP DE DE-GATA6-2 488 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 255 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 361 bp overlap
ChIP foregut GSE117136.GATA6.foregut 290 bp overlap
HSF1 1 dataset
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 316 bp overlap
JUN 1 dataset
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 188 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 247 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 118 bp overlap
NCOA1 2 datasets
ChIP MCF-7 ERP000901.NCOA1.MCF-7 324 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 218 bp overlap
NCOA2 2 datasets
ChIP MCF-7 ERP000901.NCOA2.MCF-7 452 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 168 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 279 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 234 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 489 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 220 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 242 bp overlap
RB1 1 dataset
ChIP MCF-7_siH1.2 GSE98728.RB1.MCF-7_siH1.2 184 bp overlap
RELA 2 datasets
ChIP HeLa-B2_GRKD_DMSO GSE24518.RELA.HeLa-B2_GRKD_DMSO 102 bp overlap
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 166 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 118 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 391 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 139 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 189 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 135 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5845 GSE126004.STAT3.MCF-7_jc5845 397 bp overlap
TEAD4 3 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 244 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 362 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 291 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 202 bp overlap
ZBTB5 1 dataset
ChIP K-562 ENCSR389PWB.ZBTB5.K-562 298 bp overlap
ZFX 3 datasets
ChIP MCF-7 ENCFF009NAJ 476 bp overlap
ChIP MCF-7 ENCFF009NAJ 275 bp overlap
ChIP MCF-7 ENCSR435OQD.ZFX.MCF-7 381 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 254 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 164 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 154 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 228 bp overlap