chr1 : 99,306,753 – 99,306,918
165 bp 27 TFs 0 linked genes
This 165 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:99,301,753 – 99,311,918
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 56 bp overlap
BRD4 2 datasets
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 57 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-075 165 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 165 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 142 bp overlap
CTCF 98 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 165 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 165 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 122 bp overlap
ChIP C4-2B ENCFF821XVN 165 bp overlap
ChIP C4-2B ENCFF821XVN 165 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 165 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 146 bp overlap
ChIP GM23338 ENCFF531QOI 136 bp overlap
ChIP GM23338 ENCFF531QOI 94 bp overlap
ChIP GM23338 ENCFF772DML 125 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 165 bp overlap
ChIP H1 ENCFF230QSV 162 bp overlap
ChIP H1 ENCFF414GZI 165 bp overlap
ChIP H1 ENCFF764RHO 108 bp overlap
ChIP H54 ENCFF255TVO 165 bp overlap
ChIP H9 ENCFF152GTF 165 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 164 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 162 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 165 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 165 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 165 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 165 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 165 bp overlap
ChIP HCT116 ENCFF003KHP 165 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 165 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 154 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 154 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 165 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 165 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 165 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 165 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 94 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 165 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 165 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 151 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 148 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 139 bp overlap
ChIP HepG2 ENCFF348BUL 165 bp overlap
ChIP HepG2 ENCFF668CTD 144 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 157 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 125 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 145 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 123 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 165 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 97 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 127 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 165 bp overlap
ChIP K562 ENCFF082GOI 165 bp overlap
ChIP K562 ENCFF111MGE 165 bp overlap
ChIP K562 ENCFF400DFR 163 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 165 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 127 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 153 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 162 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 162 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 139 bp overlap
ChIP MCF-7 ENCFF198DQX 165 bp overlap
ChIP MCF-7 ENCFF414SZG 165 bp overlap
ChIP MCF-7 ENCFF424NQR 165 bp overlap
ChIP MCF-7 ENCFF494VXA 165 bp overlap
ChIP MCF-7 ENCFF844STM 165 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 126 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 125 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 135 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 165 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 131 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 106 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 140 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 165 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 165 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 165 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 154 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 165 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 165 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 129 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 61 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 141 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 154 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 152 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 165 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 99 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 111 bp overlap
ChIP endodermal cell ENCFF471YCZ 165 bp overlap
ChIP endodermal cell ENCFF471YCZ 108 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 165 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 152 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 153 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 157 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 165 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 165 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 104 bp overlap
ChIP neural progenitor cell ENCFF420RBO 165 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 165 bp overlap
ChIP placenta ENCFF029PHY 165 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 165 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 165 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_15 GSE104399.GATA3.breast_tumor_Male_15 165 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 165 bp overlap
RAD21 13 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 127 bp overlap
ChIP H1 ENCFF698EWO 165 bp overlap
ChIP H1 ENCFF967OJF 165 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 165 bp overlap
ChIP HepG2 ENCFF906QIS 165 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 137 bp overlap
ChIP K562 ENCFF634XYR 165 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 165 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 165 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 165 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 152 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 139 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
REST 3 datasets
ChIP PFSK-1 ENCFF845VHA 165 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 114 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 139 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 146 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 153 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 165 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 165 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 151 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 152 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 162 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 124 bp overlap
XBP1 1 dataset
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 130 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 105 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 106 bp overlap
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