chr5 : 43,309,268 43,309,642
374 bp 32 TFs 1 linked gene
This 374 bp open chromatin element is linked to HMGCS1 and is bound by 32 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
HMGCS1 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:43,304,268 – 43,314,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 75 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 165 bp overlap
BRD4 1 dataset
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 152 bp overlap
ESR1 1 dataset
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 52 bp overlap
FOXA1 5 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 71 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 116 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 60 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 87 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 374 bp overlap
GRHL2 4 datasets
ChIP HBE GSE46194.GRHL2.HBE 80 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 64 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 65 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 99 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 59 bp overlap
ChIP K562 ENCFF317JJX 54 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 102 bp overlap
IFNA1 1 dataset
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 112 bp overlap
KAT7 1 dataset
ChIP HepG2 ENCFF613PTN 54 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 83 bp overlap
MCRS1 2 datasets
ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 342 bp overlap
ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 362 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 191 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 78 bp overlap
OSR1 1 dataset
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 4 datasets
ChIP GM12878 ENCFF263VRI 82 bp overlap
ChIP K562 ENCFF137JSF 98 bp overlap
ChIP erythroblast ENCFF498VMR 50 bp overlap
ChIP vagina ENCFF305NWS 144 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 204 bp overlap
ChIP HEK293 ENCFF145WQQ 182 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 185 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 53 bp overlap
SOX2 1 dataset
ChIP HCC95 GSE137459.SOX2.HCC95 108 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 321 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP HepG2 ENCFF661PNM 165 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 5 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 168 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 156 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 116 bp overlap
ZFP36L1 1 dataset
ChIP HepG2 ENCFF375BAZ 172 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 141 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap