chr5 : 12,235,557 12,235,833
276 bp 47 TFs 0 linked genes
This 276 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:12,230,557 – 12,240,833
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
CEBPD 1 dataset
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DUX4 2 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EBF1 1 dataset
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_36h DE_36h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 270 bp overlap
Ebf2 1 dataset
Motif DE_36h DE_36h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 229 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 259 bp overlap
ChIP DE DE-GATA4-2 276 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 236 bp overlap
ChIP DE DE-GATA6-2 276 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 276 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 276 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 276 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 272 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 263 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Gfi1B 1 dataset
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
JUN 1 dataset
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
MAZ 1 dataset
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MXI1 1 dataset
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
MZF1 1 dataset
Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap
NFYA 1 dataset
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 183 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 252 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Stat6 1 dataset
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
ZBTB24 1 dataset
Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF320 1 dataset
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF341 1 dataset
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF35 1 dataset
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZNF740 2 datasets
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap