chr4 : 181,289,053 – 181,289,763

710 bp 67 TFs 0 linked genes

This 710 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

67 transcription factors

ARNT::HIF1A 2 datasets

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

Motif DE_24h DE_24h-ARNTHIF1A_MA0259.2 5 bp overlap

ASCL1 2 datasets

ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 146 bp overlap

ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 183 bp overlap

ASXL3 2 datasets

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 475 bp overlap

ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 674 bp overlap

Ahr::Arnt 2 datasets

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

BAP1 1 dataset

ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 203 bp overlap

BCL11A 1 dataset

Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap

BRD4 4 datasets

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 547 bp overlap

ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 303 bp overlap

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 545 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 710 bp overlap

CTCF 1 dataset

ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 154 bp overlap

DMRTA1 2 datasets

Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap

Motif DE_48h DE_48h-DMRTA1_MA1707.2 10 bp overlap

E2F6 2 datasets

Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap

Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 133 bp overlap

ChIP hESC GSE26097.EOMES.hESC 232 bp overlap

ESR1 1 dataset

ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap

EZH2 3 datasets

ChIP A-673 ENCSR179SAO.EZH2.A-673 306 bp overlap

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 91 bp overlap

ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 275 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 377 bp overlap

ChIP DE DE-FOXA2-2 408 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-1 269 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 312 bp overlap

ChIP DE DE-GATA6-2 323 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 529 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 710 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 590 bp overlap

HOXC11 1 dataset

Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap

HOXD12 1 dataset

Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap

Hmga1 1 dataset

Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap

IRF2 2 datasets

Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap

Motif DE_24h DE_24h-IRF2_MA0051.2 16 bp overlap

MAX 2 datasets

ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 128 bp overlap

ChIP NCI-H128 GSE41105.MAX.NCI-H128 493 bp overlap

MEF2C 1 dataset

Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MSC 1 dataset

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MYBL1 1 dataset

Motif DE_12h DE_12h-MYBL1_MA0776.1 12 bp overlap

MYC 1 dataset

ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 173 bp overlap

MYOD1 1 dataset

Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 272 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

PAX6 2 datasets

Motif DE_12h DE_12h-PAX6_MA0069.1 14 bp overlap

Motif DE_24h DE_24h-PAX6_MA0069.1 14 bp overlap

PAX8 2 datasets

Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap

Motif DE_24h DE_24h-PAX8_MA2094.1 16 bp overlap

PBX1 2 datasets

Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap

Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F3 3 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 414 bp overlap

POU5F1 2 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

RAD21 1 dataset

ChIP SK-N-SH GSE76815.RAD21.SK-N-SH 168 bp overlap

RBPJ 2 datasets

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap

REST 2 datasets

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

Motif DE_24h DE_24h-REST_MA0138.3 20 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 313 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 208 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 204 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 349 bp overlap

SNAI2 1 dataset

Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 359 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 439 bp overlap

SRY 2 datasets

Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap

Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap

TAL1 1 dataset

ChIP PRIMA2 GSE33850.TAL1.PRIMA2 289 bp overlap

TBX18 2 datasets

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap

TBX20 2 datasets

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap

TBX21 2 datasets

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap

TFAP2B 2 datasets

Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap

Motif DE_24h DE_24h-TFAP2B_MA0811.2 11 bp overlap

Tbx6 2 datasets

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap

Yy1 2 datasets

Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap

Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZNF331 2 datasets

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap

ZNF75D 1 dataset

Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap

ZSCAN31 1 dataset

Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap