chr4 : 54,101,515 – 54,101,678
163 bp 36 TFs 1 linked gene
This 163 bp open chromatin element is linked to GSX2 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GSX2 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,096,515 – 54,106,678
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 163 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 163 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 163 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 55 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 50 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 90 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 163 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 163 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 124 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 107 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 163 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 137 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 163 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 122 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 163 bp overlap
EZH2 29 datasets
ChIP DOHH2 ENCFF528GDC 163 bp overlap
ChIP GM23248 ENCFF404ZHM 95 bp overlap
ChIP GM23338 ENCFF613YON 163 bp overlap
ChIP GM23338 ENCFF886DXX 163 bp overlap
ChIP H1 ENCFF232NZA 163 bp overlap
ChIP HepG2 ENCFF912EIW 163 bp overlap
ChIP HepG2 ENCFF912EIW 163 bp overlap
ChIP K-562 ENCSR000AQE.EZH2.K-562 69 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 163 bp overlap
ChIP Karpas-422_DMSO-D8 GSE134136.EZH2.Karpas-422_DMSO-D8 114 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 163 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 136 bp overlap
ChIP SK-N-SH ENCFF657FZK 110 bp overlap
ChIP T98G GSE112240.EZH2.T98G 132 bp overlap
ChIP astrocyte ENCFF365JTP 163 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 69 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 163 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 163 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 163 bp overlap
ChIP fibroblast of lung ENCFF479BAW 163 bp overlap
ChIP fibroblast of lung ENCFF479BAW 163 bp overlap
ChIP hESC GSE13084.EZH2.hESC 163 bp overlap
ChIP hepatocyte ENCFF552DZB 163 bp overlap
ChIP keratinocyte ENCFF070STK 163 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 163 bp overlap
ChIP neural cell ENCFF610EPB 136 bp overlap
ChIP neural cell ENCFF610EPB 154 bp overlap
ChIP neural progenitor cell ENCFF018MKA 163 bp overlap
ChIP neural progenitor cell ENCFF472NFV 163 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 163 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 163 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 100 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 163 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 163 bp overlap
ChIP H1 ENCFF078LED 92 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 55 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 163 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 163 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 163 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 103 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 163 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 163 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 163 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 163 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 88 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 163 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 60 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 163 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 127 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 64 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 163 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 163 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 57 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 154 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 163 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 163 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 163 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 157 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 163 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 138 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 88 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 63 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 59 bp overlap
ChIP WTC11 ENCFF139JAW 146 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 163 bp overlap
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