chr4 : 52,604,273 – 52,604,537
264 bp 47 TFs 0 linked genes
This 264 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:52,599,273 – 52,609,537
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 27 datasets
ChIP LNCaP GSE110655.AR.LNCaP 224 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 98 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 209 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 195 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 226 bp overlap
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 203 bp overlap
ChIP LNCaP_DHT24H GSE58428.AR.LNCaP_DHT24H 104 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 106 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 150 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 158 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 212 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 81 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 108 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 248 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 264 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 175 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 224 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 160 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 95 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 151 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 183 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 192 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 225 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 185 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 122 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 168 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 149 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 127 bp overlap
BRD4 2 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 242 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 115 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 235 bp overlap
CTCF 6 datasets
ChIP GM23338 ENCFF832KWE 264 bp overlap
ChIP GM23338 ENCFF832KWE 92 bp overlap
ChIP HFFc6 ENCFF005CJI 184 bp overlap
ChIP endodermal cell ENCFF471YCZ 162 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 50 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 64 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 239 bp overlap
Dux 2 datasets
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 166 bp overlap
ESR1 14 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 239 bp overlap
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 215 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 239 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 191 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 156 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 209 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 206 bp overlap
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 175 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 215 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 264 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 189 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 168 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 165 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 176 bp overlap
ESRRA 5 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 264 bp overlap
ChIP BT-474 GSE75876.ESRRA.BT-474 247 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 264 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 264 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 155 bp overlap
FOXA1 66 datasets
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 126 bp overlap
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 264 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 247 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 150 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 105 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 116 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 108 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 190 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 176 bp overlap
ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 138 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 199 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 207 bp overlap
ChIP 22Rv1_TFS_Crispr GSE123618.FOXA1.22Rv1_TFS_Crispr 83 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 156 bp overlap
ChIP 22Rv1_ab GSE129951.FOXA1.22Rv1_ab 208 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 264 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 229 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 106 bp overlap
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 64 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 121 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 238 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 88 bp overlap
ChIP LNCaP-C4-2B GSE40050.FOXA1.LNCaP-C4-2B 149 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 142 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 169 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 105 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 138 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 148 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 264 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 264 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 264 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 264 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 162 bp overlap
ChIP LNCaP_FA GSE114737.FOXA1.LNCaP_FA 107 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 117 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 235 bp overlap
ChIP LNCaP_GSK-48H GSE114266.FOXA1.LNCaP_GSK-48H 111 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 99 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 247 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 81 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 103 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 264 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 162 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 78 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 103 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 141 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 56 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 152 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 112 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 111 bp overlap
ChIP T-47D_DEX GSE72249.FOXA1.T-47D_DEX 127 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 125 bp overlap
ChIP T-47D_E2 GSE72249.FOXA1.T-47D_E2 127 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 95 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 139 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 178 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 60 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 117 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 235 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 230 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 187 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 264 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 94 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 100 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 95 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 137 bp overlap
FOXA2 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 155 bp overlap
ChIP DE DE-FOXA2-1 264 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 146 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 151 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 264 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 264 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 122 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 240 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 240 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 67 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 258 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 264 bp overlap
ChIP DE DE-GATA4-2 264 bp overlap
ChIP foregut GSE117136.GATA4.foregut 222 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 165 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 264 bp overlap
ChIP DE DE-GATA6-2 264 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 264 bp overlap
ChIP foregut GSE117136.GATA6.foregut 264 bp overlap
GFI1 2 datasets
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
Gfi1B 2 datasets
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HIF1A 1 dataset
ChIP PC-3_siOC2 GSE106305.HIF1A.PC-3_siOC2 154 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 264 bp overlap
LIN54 2 datasets
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
Motif DE_72h DE_72h-MEIS1_MA1639.2 9 bp overlap
MYCN 2 datasets
ChIP 22Rv1_castrated GSE117304.MYCN.22Rv1_castrated 210 bp overlap
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 264 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 161 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 64 bp overlap
NFIB 2 datasets
Motif DE_60h DE_60h-NFIB_MA1643.2 17 bp overlap
Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap
NFIC::TLX1 2 datasets
Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_72h DE_72h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 2 datasets
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
Motif DE_72h DE_72h-NFIX_MA1528.2 14 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 181 bp overlap
ONECUT1 2 datasets
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_72h DE_72h-ONECUT1_MA0679.3 9 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 163 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 264 bp overlap
RELA 1 dataset
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 131 bp overlap
RFX1 2 datasets
Motif DE_60h DE_60h-RFX1_MA0509.3 16 bp overlap
Motif DE_72h DE_72h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_60h DE_60h-RFX2_MA0600.3 14 bp overlap
Motif DE_72h DE_72h-RFX2_MA0600.3 14 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 170 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 264 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 240 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 264 bp overlap
TLE3 5 datasets
ChIP 22Rv1 GSE123618.TLE3.22Rv1 155 bp overlap
ChIP 22Rv1_WT3_Crispr GSE123618.TLE3.22Rv1_WT3_Crispr 118 bp overlap
ChIP LNCaP GSE94682.TLE3.LNCaP 196 bp overlap
ChIP LNCaP-C4-2B GSE123618.TLE3.LNCaP-C4-2B 139 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 184 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 183 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 112 bp overlap
ZNF416 2 datasets
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF692 2 datasets
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap
Motif DE_72h DE_72h-ZNF692_MA1986.2 8 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
Zic1::Zic2 2 datasets
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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