chr4 : 22,941,474 – 22,942,377
903 bp 62 TFs 0 linked genes
This 903 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:22,936,474 – 22,947,377
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
ASCL1 3 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 118 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 134 bp overlap
ATF3 2 datasets
ChIP liver ENCFF375GID 417 bp overlap
ChIP liver ENCSR480LIS.ATF3.liver 286 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 209 bp overlap
Dmbx1 2 datasets
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 357 bp overlap
ESR1 3 datasets
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 572 bp overlap
ChIP MCF-7_shCtrl_TamR GSE128445.ESR1.MCF-7_shCtrl_TamR 265 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 288 bp overlap
ETV2::HOXB13 2 datasets
Motif DE_60h DE_60h-ETV2HOXB13_MA1943.2 13 bp overlap
Motif DE_72h DE_72h-ETV2HOXB13_MA1943.2 13 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOSL2 2 datasets
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOXA1 11 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP Huh-7_ASYNC GSE39241.FOXA1.Huh-7_ASYNC 188 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 728 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 123 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 346 bp overlap
ChIP liver ENCFF537QZV 375 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 217 bp overlap
ChIP liver ERP002306.FOXA1.liver 231 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 185 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 693 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 179 bp overlap
FOXA2 7 datasets
ChIP DE DE-FOXA2-1 903 bp overlap
ChIP DE DE-FOXA2-2 903 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCFF888VJF 340 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 362 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 298 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 644 bp overlap
FOXE1 1 dataset
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXS1 2 datasets
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 492 bp overlap
ChIP DE DE-GATA4-2 800 bp overlap
ChIP foregut GSE117136.GATA4.foregut 800 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 727 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 567 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 444 bp overlap
ChIP DE DE-GATA6-2 820 bp overlap
ChIP foregut GSE117136.GATA6.foregut 339 bp overlap
HNF1B 2 datasets
ChIP H9 ERP004206.HNF1B.H9 232 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 556 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 232 bp overlap
ChIP liver ENCFF449HPV 411 bp overlap
ChIP liver ERP002306.HNF4A.liver 218 bp overlap
JUND 2 datasets
ChIP liver ENCFF007WWT 421 bp overlap
ChIP liver ENCSR837GTK.JUND.liver 308 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 312 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 531 bp overlap
KLF4 2 datasets
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 185 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 200 bp overlap
ChIP liver ENCFF584QGB 457 bp overlap
ChIP liver ENCSR521IID.MAX.liver 258 bp overlap
MXI1 2 datasets
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 328 bp overlap
Mecom 2 datasets
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 587 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 284 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 181 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 211 bp overlap
ChIP islet ERP001456.PDX1.islet 302 bp overlap
PGR 4 datasets
ChIP T-47D GSE31129.PGR.T-47D 246 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 279 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 279 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 272 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 328 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_72h DE_72h-POU2F1SOX2_MA1962.1 17 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_72h DE_72h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 436 bp overlap
ChIP liver ENCFF522JHE 401 bp overlap
REST 3 datasets
ChIP liver ENCFF240FWT 458 bp overlap
ChIP liver ENCSR867WPH.REST.liver 293 bp overlap
ChIP liver ENCSR893QWP.REST.liver 169 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 216 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 249 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 227 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 215 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 842 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 184 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 171 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 279 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 179 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 159 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 400 bp overlap
ChIP liver ENCFF769YSM 445 bp overlap
SREBF1 2 datasets
Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
STAG1 1 dataset
ChIP HL-60 ERP008568.STAG1.HL-60 230 bp overlap
Spi1 2 datasets
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
TCF12 1 dataset
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_60h DE_60h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
TFEB 2 datasets
Motif DE_60h DE_60h-TFEB_MA0692.2 8 bp overlap
Motif DE_72h DE_72h-TFEB_MA0692.2 8 bp overlap
TP53 2 datasets
Motif DE_60h DE_60h-TP53_MA0106.3 18 bp overlap
Motif DE_72h DE_72h-TP53_MA0106.3 18 bp overlap
TP63 3 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 472 bp overlap
Motif DE_60h DE_60h-TP63_MA0525.2 18 bp overlap
Motif DE_72h DE_72h-TP63_MA0525.2 18 bp overlap
TP73 2 datasets
Motif DE_60h DE_60h-TP73_MA0861.2 16 bp overlap
Motif DE_72h DE_72h-TP73_MA0861.2 16 bp overlap
YY1 3 datasets
ChIP liver ENCFF400MBC 498 bp overlap
ChIP liver ENCFF515BWJ 518 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 425 bp overlap
ZBTB33 1 dataset
ChIP liver ENCSR516HUP.ZBTB33.liver 259 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF317 2 datasets
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZSCAN4 2 datasets
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap
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