chr4 : 21,543,441 – 21,543,907

466 bp 78 TFs 0 linked genes

This 466 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

78 transcription factors

ASCL1 1 dataset

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

BACH1 1 dataset

Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap

BCL11A 2 datasets

ChIP H1 ENCFF833IPY 145 bp overlap

ChIP WA01 ENCSR000BIP.BCL11A.WA01 140 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 298 bp overlap

ChIP H1 ENCFF126NLU 348 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap

DMRTA1 1 dataset

Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap

DMRTA2 1 dataset

Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap

DMRTC2 1 dataset

Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap

DPRX 2 datasets

Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap

Motif ES_0h ES_0h-DPRX_MA1480.2 9 bp overlap

Dmrt1 1 dataset

Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 207 bp overlap

ERF::FIGLA 1 dataset

Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOSL1::JUND 1 dataset

Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 434 bp overlap

ChIP DE DE-FOXA2-2 346 bp overlap

GATA1 2 datasets

Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap

Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 330 bp overlap

ChIP G296S GSE85628.GATA4.G296S 113 bp overlap

ChIP G296S_2 GSE85628.GATA4.G296S_2 113 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 243 bp overlap

ChIP DE DE-GATA6-2 290 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 446 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 443 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 410 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 466 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 466 bp overlap

HNF1A 2 datasets

Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap

Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap

HNF1B 2 datasets

Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap

Motif ES_0h ES_0h-HNF1B_MA0153.2 13 bp overlap

HOXC13 1 dataset

Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

JUN 6 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 466 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 466 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 301 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 315 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 421 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 466 bp overlap

JUN::JUNB 1 dataset

Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap

JUNB 1 dataset

ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 243 bp overlap

MAF 1 dataset

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

MAFA 1 dataset

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 321 bp overlap

MSC 1 dataset

Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap

MYB 1 dataset

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

MYF6 1 dataset

Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap

Mecom 1 dataset

Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCFF065NZG 104 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 388 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 466 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 273 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 466 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 466 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

NR1I3 1 dataset

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

Nfat5 3 datasets

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap

Nfatc2 1 dataset

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

Nr2e1 1 dataset

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 245 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 5 datasets

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 466 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 318 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 342 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 214 bp overlap

Pgr 1 dataset

Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Pparg::Rxra 2 datasets

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

RORA 1 dataset

Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap

SCRT1 1 dataset

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SIX4 1 dataset

ChIP WTC11 ENCFF891HYW 349 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 338 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 433 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 384 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 285 bp overlap

SMARCA4 4 datasets

ChIP WA09 GSE105028.SMARCA4.WA09 339 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 382 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 337 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 445 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 440 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 404 bp overlap

SMARCC1 4 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 466 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 208 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 466 bp overlap

SNAI1 1 dataset

Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 151 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Sox5 1 dataset

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

Sox6 2 datasets

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

TCF12 3 datasets

Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 119 bp overlap

TCF3 2 datasets

Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap

ChIP NPC GSE154479.TCF3.NPC 348 bp overlap

TCF4 1 dataset

Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap

TEAD4 1 dataset

ChIP ESC S26-ESC-d0-TEAD4-exp1 307 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 391 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZMAT4 1 dataset

ChIP WTC11 ENCFF608UXZ 241 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

Zfp961 1 dataset

Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap