chr3 : 193,304,643 – 193,304,937

294 bp 104 TFs 0 linked genes

This 294 bp open chromatin element has no linked target genes and is bound by 104 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

104 transcription factors

Alx1 1 dataset

Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap

Alx4 1 dataset

Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap

Arid3a 1 dataset

Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap

Arx 1 dataset

Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap

BSX 1 dataset

Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap

CDX1 1 dataset

Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap

CDX2 1 dataset

Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap

CDX4 1 dataset

Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap

DLX1 1 dataset

Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap

DUX4 1 dataset

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

Dlx3 1 dataset

Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap

Dmrt1 1 dataset

Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap

ELK1::HOXA1 1 dataset

Motif DE_36h DE_36h-ELK1HOXA1_MA1931.1 14 bp overlap

ELK1::HOXB13 1 dataset

Motif DE_36h DE_36h-ELK1HOXB13_MA1932.2 15 bp overlap

ERF 1 dataset

Motif DE_36h DE_36h-ERF_MA0760.2 9 bp overlap

ERF::FOXI1 1 dataset

Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::HOXB13 1 dataset

Motif DE_36h DE_36h-ERFHOXB13_MA1937.2 13 bp overlap

ETS1 1 dataset

Motif DE_36h DE_36h-ETS1_MA0098.4 9 bp overlap

ETS2 1 dataset

Motif DE_36h DE_36h-ETS2_MA1484.2 9 bp overlap

ETV1 1 dataset

Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap

ETV2 1 dataset

Motif DE_36h DE_36h-ETV2_MA0762.2 9 bp overlap

ETV2::DRGX 1 dataset

Motif DE_36h DE_36h-ETV2DRGX_MA1940.2 12 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::DRGX 1 dataset

Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::HOXA2 1 dataset

Motif DE_36h DE_36h-ETV5HOXA2_MA1948.2 12 bp overlap

Erg 1 dataset

Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap

FLI1::DRGX 1 dataset

Motif DE_36h DE_36h-FLI1DRGX_MA1949.2 14 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 1 dataset

Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 278 bp overlap

ChIP DE DE-FOXA2-2 294 bp overlap

Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap

FOXA3 1 dataset

Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap

FOXB1 1 dataset

Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap

FOXD1 1 dataset

Motif DE_36h DE_36h-FOXD1_MA0031.2 7 bp overlap

FOXG1 1 dataset

Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap

FOXH1 1 dataset

Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap

FOXI1 1 dataset

Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_36h DE_36h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXK1 1 dataset

Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap

FOXN3 1 dataset

Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO4 1 dataset

Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap

FOXP1 1 dataset

Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap

FOXP2 1 dataset

Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap

FOXP4 1 dataset

Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap

Foxl2 1 dataset

Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap

Foxo1 1 dataset

Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap

GABPA 1 dataset

Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 254 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 282 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 280 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 231 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 282 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 270 bp overlap

GBX2 1 dataset

Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap

HOXB13 1 dataset

Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap

HOXB2::ELK1 1 dataset

Motif DE_36h DE_36h-HOXB2ELK1_MA1957.1 14 bp overlap

HOXB8 1 dataset

ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 262 bp overlap

HOXD12::ELK1 1 dataset

Motif DE_36h DE_36h-HOXD12ELK1_MA1958.2 13 bp overlap

HOXD9 1 dataset

Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap

Hmx1 1 dataset

Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap

IKZF1 1 dataset

Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap

LBX2 1 dataset

Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap

MXI1 1 dataset

Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap

Msx3 1 dataset

Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 291 bp overlap

NKX6-3 1 dataset

Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap

Nobox 1 dataset

Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap

Nr2e1 1 dataset

Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PROP1 1 dataset

Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap

Pax7 1 dataset

Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap

RAX 1 dataset

Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 127 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 273 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 294 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 270 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 270 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 294 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 214 bp overlap

VENTX 1 dataset

Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap

Yy1 1 dataset

Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap

ZNF175 1 dataset

Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap

ZNF354A 1 dataset

Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap

ZNF75A 1 dataset

Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap

ZNF766 1 dataset

Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap

ZNF85 1 dataset

Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap