chr3 : 137,778,935 – 137,779,603

668 bp 58 TFs 1 linked gene

This 668 bp open chromatin element is linked to LINC01210 and is bound by 58 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01210		7.0 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

ARNT::HIF1A 1 dataset

Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap

Arid3a 1 dataset

Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 366 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 312 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 271 bp overlap

CEBPA 1 dataset

ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 136 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 87 bp overlap

DMRTA2 1 dataset

Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 644 bp overlap

EZH1 1 dataset

ChIP ProEs GSE59087.EZH1.ProEs 111 bp overlap

EZH2 1 dataset

ChIP H1 ENCFF232NZA 522 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 89 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 668 bp overlap

ChIP DE DE-FOXA2-2 668 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 342 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 645 bp overlap

ChIP DE DE-GATA4-2 668 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 591 bp overlap

ChIP DE DE-GATA6-2 660 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 591 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 616 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 480 bp overlap

HOXA10 1 dataset

Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap

HOXA3 1 dataset

Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap

HOXA4 1 dataset

Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap

HOXB4 1 dataset

Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap

HOXB9 1 dataset

Motif DE_48h DE_48h-HOXB9_MA1503.2 9 bp overlap

HOXC10 1 dataset

Motif DE_48h DE_48h-HOXC10_MA0905.2 9 bp overlap

HOXC11 1 dataset

Motif DE_48h DE_48h-HOXC11_MA0651.3 11 bp overlap

HOXC12 1 dataset

Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap

HOXC4 1 dataset

Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap

HOXC9 1 dataset

Motif DE_48h DE_48h-HOXC9_MA0485.3 9 bp overlap

HOXD10 1 dataset

Motif DE_48h DE_48h-HOXD10_MA1506.2 10 bp overlap

HOXD11 1 dataset

Motif DE_48h DE_48h-HOXD11_MA0908.2 9 bp overlap

HOXD12 1 dataset

Motif DE_48h DE_48h-HOXD12_MA0873.2 10 bp overlap

HOXD4 1 dataset

Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap

HOXD9 1 dataset

Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap

Hoxa11 1 dataset

Motif DE_48h DE_48h-Hoxa11_MA0911.2 9 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 215 bp overlap

JUN 6 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 371 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 346 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 668 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 330 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 222 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 668 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 440 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 185 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 548 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 255 bp overlap

ChIP hESC GSE18292.NANOG.hESC 225 bp overlap

ChIP hESC GSE20650.NANOG.hESC 203 bp overlap

NEUROD1 1 dataset

ChIP D283-Med GSE92582.NEUROD1.D283-Med 206 bp overlap

NFATC3 2 datasets

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap

NKX6-1 1 dataset

Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap

NKX6-3 1 dataset

Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap

Nfat5 2 datasets

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap

Nfatc1 2 datasets

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 2 datasets

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap

POU5F1 2 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 400 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 262 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 489 bp overlap

RNF2 2 datasets

ChIP WA01 GSE104690.RNF2.WA01 262 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 306 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 430 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 526 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 437 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 417 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 510 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 387 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 343 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 387 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 235 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 260 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 355 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 431 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 313 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 298 bp overlap

SRSF9 2 datasets

ChIP Hep-G2 ENCSR624GNZ.SRSF9.Hep-G2 231 bp overlap

ChIP HepG2 ENCFF517BYU 296 bp overlap

T 3 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 353 bp overlap

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 290 bp overlap

TBX20 1 dataset

Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap

ZNF189 2 datasets

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 109 bp overlap

ZNF512 2 datasets

ChIP WTC11 ENCFF086TTM 397 bp overlap

ChIP WTC11 ENCFF086TTM 273 bp overlap

ZNF675 2 datasets

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap