Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

38 transcription factors

Bcl11B 1 dataset

Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap

Crx 2 datasets

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

Dmbx1 2 datasets

Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap

FIGLA 1 dataset

Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 373 bp overlap

ChIP DE DE-FOXA2-2 317 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 403 bp overlap

ChIP DE DE-GATA4-2 418 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 326 bp overlap

ChIP DE DE-GATA6-2 455 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 317 bp overlap

GSC 2 datasets

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

IRF9 1 dataset

Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap

MAZ 2 datasets

Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap

Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap

MGA::EVX1 2 datasets

Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap

Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap

OSR2 1 dataset

Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap

OTX1 2 datasets

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

PAX3 2 datasets

Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap

Motif DE_72h DE_72h-PAX3_MA0780.1 10 bp overlap

PHOX2A 2 datasets

Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap

Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 2 datasets

Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap

Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap

PITX1 2 datasets

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

PRDM9 2 datasets

Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap

Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap

PROP1 2 datasets

Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap

Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap

Pax7 2 datasets

Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap

Motif DE_72h DE_72h-Pax7_MA0680.3 10 bp overlap

Ptf1A 1 dataset

Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap

RHOXF1 2 datasets

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 348 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 266 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 281 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 381 bp overlap

SP1 2 datasets

Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap

Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap

SP4 2 datasets

Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap

Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap

SP5 2 datasets

Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

Spi1 1 dataset

Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap

Wt1 2 datasets

Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap

Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap

ZBTB17 2 datasets

Motif DE_48h DE_48h-ZBTB17_MA2102.1 8 bp overlap

Motif DE_72h DE_72h-ZBTB17_MA2102.1 8 bp overlap

ZEB1 1 dataset

Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap

ZKSCAN5 2 datasets

Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap

Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF148 2 datasets

Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap

Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap

ZNF680 1 dataset

Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap

ZNF707 1 dataset

Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap

Gene	Dist. to TSS	Distance	Link type
ENSG00000290241	17.3 kb	Distal	Multiome
ACAD9	46.5 kb	Distal	Multiome
RAB7A	107.0 kb	Distal	Multiome
CFAP92	160.9 kb	Distal	Multiome
RPN1	182.4 kb	Distal	Multiome
RAB43	289.0 kb	Distal	Multiome

Genome Browser