chr3 : 115,624,831 115,625,170
339 bp 23 TFs 1 linked gene
This 339 bp open chromatin element is linked to GAP43 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GAP43 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:115,619,831 – 115,630,170
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP 402-91 GSE111253.BRD4.402-91 176 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 224 bp overlap
CTCF 14 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 187 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 163 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 115 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 134 bp overlap
ChIP brain ENCFF685VRG 232 bp overlap
ChIP brain ENCFF685VRG 339 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 334 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 320 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 309 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 334 bp overlap
ChIP endodermal cell ENCFF471YCZ 339 bp overlap
ChIP neural cell ENCFF335ADI 317 bp overlap
ChIP neural cell ENCFF335ADI 327 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 283 bp overlap
EZH2 6 datasets
ChIP fibroblast of lung ENCFF479BAW 65 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 106 bp overlap
ChIP keratinocyte ENCFF070STK 197 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 118 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 139 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 339 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 189 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 217 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 194 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 268 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 143 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 232 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 220 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 213 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 245 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 144 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 170 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 171 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 197 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 281 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 301 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SUZ12 1 dataset
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 217 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 277 bp overlap
ChIP neural cell ENCFF468SPD 85 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 106 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 173 bp overlap