chr3 : 84,073,320 – 84,074,179

859 bp 63 TFs 0 linked genes

This 859 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

63 transcription factors

ATF4 1 dataset

Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap

Ahr::Arnt 2 datasets

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap

Bach1::Mafk 2 datasets

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap

CDX1 1 dataset

Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap

CDX4 1 dataset

Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF680YXW 255 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 133 bp overlap

FOS 2 datasets

Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap

Motif ES_0h ES_0h-FOS_MA0476.2 8 bp overlap

GATA4 2 datasets

Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap

Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap

GATA6 3 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 372 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 300 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap

HNF1A 3 datasets

Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap

Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap

HOXA10 1 dataset

Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap

HOXB13 1 dataset

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

HOXD9 1 dataset

Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap

Hmga1 1 dataset

Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap

JUN 6 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 375 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 661 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 301 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 601 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 436 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 542 bp overlap

Jun 2 datasets

Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap

Motif ES_0h ES_0h-Jun_MA0489.3 8 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

MAF 3 datasets

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap

MAF::NFE2 2 datasets

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap

MAFA 3 datasets

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap

MAFG::NFE2L1 2 datasets

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAFK 2 datasets

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

Mafg 2 datasets

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 721 bp overlap

Nfe2l2 2 datasets

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU5F1 2 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 563 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 426 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RELB 2 datasets

Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap

Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap

REST 1 dataset

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

SMAD2_3 1 dataset

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 373 bp overlap

SMAD3 3 datasets

ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 193 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 420 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 360 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 345 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 373 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 281 bp overlap

TRIM28 2 datasets

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 197 bp overlap

ChIP hESC GSE115387.TRIM28.hESC 287 bp overlap

Wt1 1 dataset

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

ZNF282 1 dataset

Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap

ZNF506 1 dataset

ChIP HEK293T GSE78099.ZNF506.HEK293T 126 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

ZNF680 1 dataset

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap

ZNF684 1 dataset

Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap

ZNF76 1 dataset

Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap