chr3 : 15,778,289 15,779,019
730 bp 55 TFs 0 linked genes
This 730 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:15,773,289 – 15,784,019
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 136 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 198 bp overlap
BCL11A 2 datasets
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 57 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 56 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT916 GSE128230.CDK8.leiomyoma_PT916 55 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 188 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif DE_24h DE_24h-CEBPD_MA0836.3 8 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 100 bp overlap
CHD8 1 dataset
ChIP T-47D_R5020_45 GSE62428.CHD8.T-47D_R5020_45 159 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 259 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 310 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 423 bp overlap
CTCF 32 datasets
ChIP D721Med ENCFF513FYD 211 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 188 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 171 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 124 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 121 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 144 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 103 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 285 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 205 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 248 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 255 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 141 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 207 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 221 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 206 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 164 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 165 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 192 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 317 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 375 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 407 bp overlap
DMRTA2 2 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 440 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 336 bp overlap
Dmrt1 2 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_24h DE_24h-Dmrt1_MA1603.2 9 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 207 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 258 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 233 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 75 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 269 bp overlap
ChIP DE DE-GATA4-1 586 bp overlap
ChIP DE DE-GATA4-2 496 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 333 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 509 bp overlap
ChIP DE DE-GATA6-2 512 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 491 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 551 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 349 bp overlap
HLF 3 datasets
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
Motif DE_24h DE_24h-HLF_MA0043.4 9 bp overlap
ChIP HepG2 ENCFF854JLR 234 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 177 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 135 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 273 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 283 bp overlap
KLF9 1 dataset
ChIP MCF-7 ENCFF618FCM 557 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 108 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 254 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 327 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 239 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 73 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 416 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 412 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 434 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 217 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 334 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 532 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 350 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 141 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 55 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 186 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 123 bp overlap
ChIP K562 ENCFF634XYR 365 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 176 bp overlap
ChIP MDM GSE103477.RAD21.MDM 230 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 265 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
Motif DE_24h DE_24h-RARA_MA0730.1 17 bp overlap
RARA::RXRA 2 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_24h DE_24h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 2 datasets
Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_24h DE_24h-RARARXRG_MA1149.2 17 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 361 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif DE_24h DE_24h-Rarb_MA0858.1 17 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 283 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_24h DE_24h-SOX10_MA0442.3 6 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 288 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 140 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 166 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 194 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 207 bp overlap
ChIP HEK293 ENCFF784SLD 406 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 252 bp overlap