chr1 : 53,384,719 53,385,348
629 bp 32 TFs 4 linked genes
This 629 bp open chromatin element is linked to 4 target genes and is bound by 32 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
LRP8 57.0 kb Distal Multiome
MAGOH 146.5 kb Distal Multiome
CZIB 164.4 kb Distal Multiome
CPT2 188.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:53,379,719 – 53,390,348
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 150 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 146 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 114 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 55 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 116 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 99 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
ESR1 3 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 149 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 160 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 129 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 333 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 337 bp overlap
ChIP DE DE-FOXA2-2 451 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 50 bp overlap
GATA1 7 datasets
ChIP K-562 GSE107726.GATA1.K-562 409 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 248 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 226 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 224 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 280 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 219 bp overlap
ChIP erythroid_Don002 GSE137982.GATA1.erythroid_Don002 212 bp overlap
GATA2 10 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 122 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 138 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 138 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 232 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 200 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 256 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 189 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 207 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 276 bp overlap
GATA3 7 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 306 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 292 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 294 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 198 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 217 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 142 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 119 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 283 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 194 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 550 bp overlap
ChIP DE DE-GATA4-2 629 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 396 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 453 bp overlap
ChIP DE DE-GATA6-2 629 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 510 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 583 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 424 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 629 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 629 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 572 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 580 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 296 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 196 bp overlap
JMJD1C 1 dataset
ChIP NB4 GSE63484.JMJD1C.NB4 137 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 274 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 66 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 252 bp overlap
PGR 2 datasets
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 240 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 150 bp overlap
RUNX1 1 dataset
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 154 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 499 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 434 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 425 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 540 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 530 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 629 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 208 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 151 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 185 bp overlap
ZIM3 1 dataset
ChIP HEK293 GSE76494.ZIM3.HEK293 236 bp overlap