chr2 : 228,016,376 – 228,016,834

458 bp 56 TFs 0 linked genes

This 458 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

56 transcription factors

AHR 1 dataset

ChIP GM01310_DMSO GSE116632.AHR.GM01310_DMSO 97 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 360 bp overlap

ATF2 1 dataset

ChIP GM12878 ENCSR000BQK.ATF2.GM12878 222 bp overlap

BATF 1 dataset

ChIP GM12878 ENCFF954REE 231 bp overlap

BATF3 1 dataset

ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 385 bp overlap

BHLHE40 1 dataset

ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 233 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF093OYK 399 bp overlap

ChIP BLaER1 ENCFF364PUR 165 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

ELK1::SREBF2 1 dataset

Motif DE_12h DE_12h-ELK1SREBF2_MA1933.2 15 bp overlap

ESR1 2 datasets

ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 243 bp overlap

ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 237 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

ETV6 1 dataset

ChIP GM12878 GSE97661.ETV6.GM12878 178 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FOXA1 20 datasets

ChIP MCF-7 GSE59530.FOXA1.MCF-7 168 bp overlap

ChIP MCF-7 ERP001226.FOXA1.MCF-7 167 bp overlap

ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 171 bp overlap

ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 129 bp overlap

ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 142 bp overlap

ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 211 bp overlap

ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 235 bp overlap

ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 136 bp overlap

ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 267 bp overlap

ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 246 bp overlap

ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 149 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 194 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 187 bp overlap

ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 154 bp overlap

ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 268 bp overlap

ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 312 bp overlap

ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 311 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 329 bp overlap

ChIP ZR751 GSE72249.FOXA1.ZR751 222 bp overlap

ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 289 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

Hnf1A 2 datasets

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IKZF2 2 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JUNB 1 dataset

ChIP GM12878 ENCSR897MMC.JUNB.GM12878 205 bp overlap

KDM1A 1 dataset

ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 302 bp overlap

KMT2A 1 dataset

ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 136 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MED 1 dataset

ChIP SEM GSE83671.MED.SEM 345 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 288 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 243 bp overlap

NEUROG2 2 datasets

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 174 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NIPBL 1 dataset

ChIP GM12878 GSE93080.NIPBL.GM12878 175 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 4 datasets

ChIP GM23338 ENCFF333SNB 268 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 295 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 148 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 213 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap

RARA 1 dataset

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

RUNX1 1 dataset

ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 309 bp overlap

RUNX3 1 dataset

ChIP GM12878 ENCFF395WHA 106 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 68 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 197 bp overlap

Six4 1 dataset

Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap

TCF7 1 dataset

Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap

TCF7L2 1 dataset

ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 337 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap

THAP1 1 dataset

Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap

TWIST1 1 dataset

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

ZBTB18 1 dataset

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZNF135 1 dataset

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 231 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 160 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

ZNF770 1 dataset

Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap