chr1 : 50,529,564 – 50,529,818
254 bp 34 TFs 0 linked genes
This 254 bp open chromatin element has no linked target genes and is bound by 34 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,524,564 – 50,534,818
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AR 37 datasets
ChIP LNCaP ERP001226.AR.LNCaP 210 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 179 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 185 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 222 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 133 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 187 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 165 bp overlap
ChIP LNCaP_DHT_Bag-1L-CMut GSE89938.AR.LNCaP_DHT_Bag-1L-CMut 116 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 224 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 217 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 158 bp overlap
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 235 bp overlap
ChIP LNCaP_L388M_shFOXA1_Ethanol GSE128883.AR.LNCaP_L388M_shFOXA1_Ethanol 236 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 254 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 234 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 192 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 202 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 132 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 254 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 225 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 179 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 187 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 141 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 218 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 111 bp overlap
ChIP VCaP GSE148358.AR.VCaP 133 bp overlap
ChIP prostate GSE65478.AR.prostate 228 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 195 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 118 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 112 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 188 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 116 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 186 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 249 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 121 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 207 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 184 bp overlap
ARID1A 1 dataset
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 132 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 178 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 125 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 55 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 84 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-075 228 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 254 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 254 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 254 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 106 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 111 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 153 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_IL1b-ICI GSE67295.ESR1.MCF-7_IL1b-ICI 116 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
ChIP T-47D ENCSR000BJS.ESR1.T-47D 131 bp overlap
FOXA1 37 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 167 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 113 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 176 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 117 bp overlap
ChIP LNCaP-C4-2B GSE40050.FOXA1.LNCaP-C4-2B 254 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 244 bp overlap
ChIP LNCaP-C4-2B_DHT GSE40050.FOXA1.LNCaP-C4-2B_DHT 199 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 191 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 153 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 144 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.FOXA1.LNCaP_1F5_SIFOXA1 156 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 101 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 254 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 143 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 254 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 155 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 154 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 183 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 126 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 192 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 125 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 254 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 131 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 110 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 135 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 183 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 131 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 196 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 118 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 180 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 190 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 75 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 181 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 254 bp overlap
ChIP prostate_P29 GSE130408.FOXA1.prostate_P29 181 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 202 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 157 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 254 bp overlap
ChIP DE DE-FOXA2-2 254 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 127 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 121 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 170 bp overlap
GATA2 6 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 234 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 234 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 229 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 237 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 165 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 243 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 213 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 254 bp overlap
ChIP DE DE-GATA4-2 254 bp overlap
ChIP foregut GSE117136.GATA4.foregut 254 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 254 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 254 bp overlap
ChIP DE DE-GATA6-2 254 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 253 bp overlap
GRHL2 3 datasets
ChIP LNCaP GSE80256.GRHL2.LNCaP 233 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 225 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 129 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 254 bp overlap
HOXB13 18 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 227 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 191 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 188 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 64 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 245 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 156 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 144 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 189 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 207 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 254 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 161 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 153 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 165 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 179 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 171 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 254 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 145 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 207 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 111 bp overlap
NANOG 3 datasets
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 200 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 179 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 193 bp overlap
NR3C1 2 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 178 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 196 bp overlap
RELA 2 datasets
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 211 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 131 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 81 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 158 bp overlap
STAT3 2 datasets
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 254 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 159 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 210 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 176 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 189 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 173 bp overlap
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