chr1 : 50,270,967 50,271,240
273 bp 28 TFs 1 linked gene
This 273 bp open chromatin element is linked to LINC02808 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02808 8.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,265,967 – 50,276,240
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 111 bp overlap
BRD4 6 datasets
ChIP BE2C GSE80151.BRD4.BE2C 273 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 273 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 257 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 273 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 273 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 273 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 223 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 156 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 166 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 192 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 273 bp overlap
ChIP DE DE-FOXA2-2 248 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 153 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 258 bp overlap
ChIP DE DE-GATA4-2 243 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 273 bp overlap
ChIP DE DE-GATA6-2 248 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 273 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 195 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 166 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 273 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 236 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 143 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 142 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 180 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 122 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 267 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 227 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 187 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 273 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 131 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 131 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 128 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 106 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 253 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 114 bp overlap
ZNF507 1 dataset
ChIP K562 ENCFF577IRE 245 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 107 bp overlap