Transcription factors with Perturb-seq knockdown data for LINC02808. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC02808 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC02808, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:50,270,967–50,271,240 | 8.9 kb | Proximal (<10kb) | 28 | |
| chr1:50,271,345–50,272,244 | 7.9 kb | Proximal (<10kb) | 161 | |
| chr1:50,275,437–50,276,205 | 4.0 kb | Proximal (<10kb) | 165 | |
| chr1:50,279,693–50,280,235 | at TSS | At TSS | 162 |
Genomic view of the LINC02808 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.