chr2 : 205,464,689 – 205,465,036
347 bp 57 TFs 0 linked genes
This 347 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:205,459,689 – 205,470,036
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Atf3 3 datasets
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
Motif DE_36h DE_36h-Atf3_MA1988.2 7 bp overlap
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 3 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BATF 3 datasets
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
Motif DE_36h DE_36h-BATF_MA1634.2 7 bp overlap
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 3 datasets
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
Motif DE_36h DE_36h-BATF3_MA0835.3 7 bp overlap
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 3 datasets
Motif DE_12h DE_12h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_36h DE_36h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap
BNC2 3 datasets
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
Motif DE_36h DE_36h-BNC2_MA1928.2 7 bp overlap
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 203 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
Dmbx1 1 dataset
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 180 bp overlap
ERF::HOXB13 2 datasets
Motif DE_36h DE_36h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_60h DE_60h-ERFHOXB13_MA1937.2 13 bp overlap
ETV2 1 dataset
Motif DE_36h DE_36h-ETV2_MA0762.2 9 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
FLI1 6 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 228 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 236 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 260 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 261 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 239 bp overlap
ChIP A-673_D7 GSE129155.FLI1.A-673_D7 257 bp overlap
FOS 3 datasets
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
FOSL1 3 datasets
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap
FOSL2 3 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 347 bp overlap
ChIP DE DE-FOXA2-2 347 bp overlap
FOXE1 2 datasets
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXO6 3 datasets
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 315 bp overlap
ChIP DE DE-GATA4-2 347 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 347 bp overlap
ChIP DE DE-GATA6-2 347 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 330 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 307 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 345 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 347 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 322 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 347 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
IKZF1 1 dataset
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 318 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 347 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 347 bp overlap
Jun 3 datasets
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 311 bp overlap
MAF::NFE2 3 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_36h DE_36h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 3 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_36h DE_36h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
MGA::EVX1 1 dataset
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 298 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 250 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 307 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 238 bp overlap
NR4A2::RXRA 1 dataset
Motif DE_36h DE_36h-NR4A2RXRA_MA1147.2 13 bp overlap
Nfe2l2 3 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 212 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 220 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 281 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 347 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 347 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 107 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 253 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 307 bp overlap
ZNF184 1 dataset
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
ZNF652 1 dataset
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
ZNF76 2 datasets
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Motif DE_60h DE_60h-ZNF76_MA1716.2 17 bp overlap
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