chr2 : 162,768,769 – 162,768,955
186 bp 42 TFs 1 linked gene
This 186 bp open chromatin element is linked to KCNH7-AS1 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCNH7-AS1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:162,763,769 – 162,773,955
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 69 bp overlap
ASCL1 5 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 58 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 87 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 68 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 113 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 96 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 186 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 186 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 186 bp overlap
BRD4 14 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 145 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 186 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 89 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 186 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 155 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 160 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 186 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 186 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 186 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 186 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 186 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 186 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 186 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 133 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 186 bp overlap
ChIP neural cell ENCFF442QNK 186 bp overlap
EWSR1-FLI1 1 dataset
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOXA1 1 dataset
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 54 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 124 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 174 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 186 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 162 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 186 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 159 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 147 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 170 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 186 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 115 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 186 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 164 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 1 dataset
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 186 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 153 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 129 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 113 bp overlap
PGR 1 dataset
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 110 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 186 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 186 bp overlap
ChIP neural cell ENCFF882LXX 186 bp overlap
RFX1 9 datasets
ChIP HepG2 ENCFF144SCF 186 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 186 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 186 bp overlap
ChIP K562 ENCFF421AVO 103 bp overlap
ChIP K562 ENCFF809XVG 90 bp overlap
ChIP MCF-7 ENCFF782EZS 171 bp overlap
ChIP MCF-7 ENCFF973QAD 185 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 186 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 186 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 186 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 186 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 186 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 186 bp overlap
ChIP NPC GSE122631.SOX2.NPC 173 bp overlap
STAT1::STAT2 1 dataset
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
TBX20 1 dataset
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 55 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 160 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF324 2 datasets
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
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