chr2 : 157,960,454 – 157,960,920
466 bp 63 TFs 0 linked genes
This 466 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:157,955,454 – 157,965,920
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ATF4 2 datasets
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
BACH1 1 dataset
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
CDX4 2 datasets
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
CEBPG 2 datasets
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 289 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DPRX 2 datasets
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
DUX4 4 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Dmbx1 2 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
EBF1 1 dataset
Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 236 bp overlap
Ebf2 1 dataset
Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap
FOS::JUN 1 dataset
Motif DE_36h DE_36h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUND 1 dataset
Motif DE_36h DE_36h-FOSJUND_MA1141.2 9 bp overlap
FOSL1 1 dataset
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUN 1 dataset
Motif DE_36h DE_36h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 1 dataset
Motif DE_36h DE_36h-FOSL1JUNB_MA1137.2 9 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 325 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 405 bp overlap
ChIP DE DE-GATA4-2 433 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 187 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 343 bp overlap
ChIP DE DE-GATA6-2 449 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 410 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 419 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 447 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 456 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 382 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 368 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 274 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Gfi1B 2 datasets
Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HNF4A 1 dataset
Motif DE_48h DE_48h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_48h DE_48h-HNF4G_MA0484.3 9 bp overlap
HOXA10 2 datasets
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXB9 2 datasets
Motif DE_36h DE_36h-HOXB9_MA1503.2 9 bp overlap
Motif DE_48h DE_48h-HOXB9_MA1503.2 9 bp overlap
HOXC10 2 datasets
Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap
Motif DE_48h DE_48h-HOXC10_MA0905.2 9 bp overlap
HOXC12 2 datasets
Motif DE_36h DE_36h-HOXC12_MA0906.2 10 bp overlap
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
HOXC13 2 datasets
Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap
Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap
HOXC9 2 datasets
Motif DE_36h DE_36h-HOXC9_MA0485.3 9 bp overlap
Motif DE_48h DE_48h-HOXC9_MA0485.3 9 bp overlap
HOXD10 2 datasets
Motif DE_36h DE_36h-HOXD10_MA1506.2 10 bp overlap
Motif DE_48h DE_48h-HOXD10_MA1506.2 10 bp overlap
HOXD11 2 datasets
Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap
Motif DE_48h DE_48h-HOXD11_MA0908.2 9 bp overlap
HOXD12 2 datasets
Motif DE_36h DE_36h-HOXD12_MA0873.2 10 bp overlap
Motif DE_48h DE_48h-HOXD12_MA0873.2 10 bp overlap
HOXD9 2 datasets
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 2 datasets
Motif DE_36h DE_36h-Hoxa11_MA0911.2 9 bp overlap
Motif DE_48h DE_48h-Hoxa11_MA0911.2 9 bp overlap
JDP2 1 dataset
Motif DE_36h DE_36h-JDP2_MA0655.1 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 274 bp overlap
JUNB 1 dataset
Motif DE_36h DE_36h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_36h DE_36h-JUND_MA0491.3 9 bp overlap
KLF5 2 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
NRL 2 datasets
Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU2F1::SOX2 4 datasets
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
PPARA::RXRA 2 datasets
Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
Pou5f1::Sox2 4 datasets
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 236 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 256 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 320 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 338 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 466 bp overlap
Thap11 1 dataset
Motif DE_48h DE_48h-Thap11_MA1573.2 14 bp overlap
ZKSCAN1 2 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF143 1 dataset
Motif DE_36h DE_36h-ZNF143_MA0088.2 16 bp overlap
ZNF324 2 datasets
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZSCAN21 2 datasets
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
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