chr2 : 109,203,862 109,204,715
853 bp 45 TFs 1 linked gene
This 853 bp open chromatin element is linked to SH3RF3 and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SH3RF3 75.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:109,198,862 – 109,209,715
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 112 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 104 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 261 bp overlap
ChIP COLO-205 GSE73319.BRD4.COLO-205 122 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 354 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 194 bp overlap
CTCF 78 datasets
ChIP 22Rv1 ENCFF466OXN 178 bp overlap
ChIP 22Rv1 ENCFF466OXN 278 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 292 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 323 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 266 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 109 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 204 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 132 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 312 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 405 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 362 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 240 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 259 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 193 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 283 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 271 bp overlap
ChIP HCT116 ENCFF003KHP 197 bp overlap
ChIP HCT116 ENCFF209YMI 226 bp overlap
ChIP HCT116 ENCFF373YMA 307 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 134 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 120 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 99 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP HepG2 ENCFF348BUL 194 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 174 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 150 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 238 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 156 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 284 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 176 bp overlap
ChIP MCF-7 ENCFF139NQI 216 bp overlap
ChIP MCF-7 ENCFF162GNE 218 bp overlap
ChIP MCF-7 ENCFF198DQX 116 bp overlap
ChIP MCF-7 ENCFF210JUZ 163 bp overlap
ChIP MCF-7 ENCFF414SZG 180 bp overlap
ChIP MCF-7 ENCFF424NQR 179 bp overlap
ChIP MCF-7 ENCFF494VXA 116 bp overlap
ChIP MCF-7 ENCFF844STM 176 bp overlap
ChIP MCF-7 ENCFF954TUV 161 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 262 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 258 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 220 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 202 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 197 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 186 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 194 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 176 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 275 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 281 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 229 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 269 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 305 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 171 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.CTCF.MCF-7_E2_SHCTCF 136 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 179 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 131 bp overlap
ChIP OCI-LY1 ENCFF455ESK 292 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 322 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 323 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 344 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 297 bp overlap
ChIP Peyer's patch ENCFF701KWW 237 bp overlap
ChIP Peyer's patch ENCFF746TCR 287 bp overlap
ChIP Peyer's patch ENCFF828IDE 251 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 245 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 230 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 174 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 424 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 172 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 94 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 250 bp overlap
ChIP endodermal cell ENCFF471YCZ 317 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 151 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 133 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 126 bp overlap
DNMT3B 1 dataset
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 248 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 263 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 231 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 224 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 217 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 218 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 221 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 218 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 206 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 220 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 187 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 199 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 85 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 417 bp overlap
FOXA1 1 dataset
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 201 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 365 bp overlap
ChIP DE DE-FOXA2-1 444 bp overlap
ChIP DE DE-FOXA2-2 548 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1ELF1_MA1953.2 13 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 251 bp overlap
GATA3 5 datasets
ChIP MCF-7 ENCFF352QVM 454 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 329 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 349 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 204 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 388 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 243 bp overlap
ChIP DE DE-GATA4-1 742 bp overlap
ChIP DE DE-GATA4-2 853 bp overlap
ChIP foregut GSE117136.GATA4.foregut 655 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 414 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 351 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 245 bp overlap
ChIP DE DE-GATA6-1 559 bp overlap
ChIP DE DE-GATA6-2 853 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 841 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 817 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 853 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 853 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 853 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 853 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 161 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 812 bp overlap
ChIP foregut GSE117136.GATA6.foregut 548 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 454 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 353 bp overlap
GRHL2 2 datasets
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S54-DE-d2-JUN-exp2 263 bp overlap
JUND 2 datasets
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 249 bp overlap
MAX 2 datasets
ChIP HCT116 ENCFF810LEN 333 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 141 bp overlap
MYC 2 datasets
ChIP Jurkat GSE83777.MYC.Jurkat 192 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 133 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 124 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 54 bp overlap
RAD21 14 datasets
ChIP HCT-116 GSE121355.RAD21.HCT-116 301 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 215 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 153 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 279 bp overlap
ChIP HCT116 ENCFF568PEO 283 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 175 bp overlap
ChIP MCF-7 ENCFF694KOM 251 bp overlap
ChIP MCF-7 ENCFF724VCQ 242 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 216 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 173 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 183 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 188 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 157 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 795 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 853 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 788 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 674 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 672 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 331 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 589 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 787 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 148 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 326 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 646 bp overlap
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 290 bp overlap
ChIP MCF-7_KO GSE124225.SMARCC1.MCF-7_KO 242 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 222 bp overlap
SMC1A 2 datasets
ChIP MCF-7 GSE115602.SMC1A.MCF-7 128 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 161 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 309 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 853 bp overlap
STAG1 3 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 201 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 183 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 124 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 51 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 271 bp overlap
TRPS1 3 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ChIP MCF-7 GSE133072.TRPS1.MCF-7 471 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 164 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 106 bp overlap