chr1 : 34,749,736 34,750,608
872 bp 52 TFs 6 linked genes
This 872 bp open chromatin element is linked to 6 target genes and is bound by 52 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
GJB4 9.1 kb Proximal Proximity
GJA4 42.9 kb Distal Multiome
SMIM12 109.6 kb Distal Multiome
TMEM35B 235.2 kb Distal Multiome
ZMYM6 281.8 kb Distal Multiome
CSMD2 584.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:34,744,736 – 34,755,608
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 181 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 265 bp overlap
ChIP BLaER1 ENCFF460KDD 476 bp overlap
DUX4 2 datasets
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 56 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 232 bp overlap
ChIP hESC GSE26097.EOMES.hESC 142 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 173 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 173 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 772 bp overlap
ChIP DE DE-FOXA2-2 790 bp overlap
FOXH1 2 datasets
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
GATA2 3 datasets
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 232 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 150 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 872 bp overlap
ChIP DE DE-GATA4-2 820 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 534 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 467 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 446 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 780 bp overlap
ChIP DE DE-GATA6-2 867 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 282 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 387 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 502 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 513 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 760 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 503 bp overlap
ChIP foregut GSE117136.GATA6.foregut 511 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 538 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 432 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
JDP2 1 dataset
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 407 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 703 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 574 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 641 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 66 bp overlap
MYB 2 datasets
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 184 bp overlap
NFE2 1 dataset
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
NFYA 2 datasets
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYB 3 datasets
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 188 bp overlap
NFYC 2 datasets
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NKX2-2 1 dataset
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
PBX1 1 dataset
Motif DE_72h DE_72h-PBX1_MA0070.2 9 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 398 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 271 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 392 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 107 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 437 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 267 bp overlap
Plagl1 1 dataset
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RARA 1 dataset
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 88 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 260 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 480 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 867 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 558 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 579 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 510 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 487 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 535 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 535 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 174 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 586 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 745 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 143 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
VENTX 1 dataset
Motif DE_72h DE_72h-VENTX_MA0724.1 9 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 228 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap