chr2 : 61,787,728 61,788,473
745 bp 51 TFs 4 linked genes
This 745 bp open chromatin element is linked to 4 target genes and is bound by 51 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
FAM161A 65.9 kb Distal Multiome
CCT4 100.3 kb Distal Multiome
COMMD1 117.5 kb Distal Multiome
XPO1 249.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:61,782,728 – 61,793,473
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 136 bp overlap
EBF1 2 datasets
Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap
Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 329 bp overlap
ESR1 3 datasets
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 126 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 211 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 344 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 354 bp overlap
Ebf4 2 datasets
Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 242 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 568 bp overlap
ChIP DE DE-FOXA2-2 569 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 326 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 191 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 182 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 220 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 160 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 236 bp overlap
ChIP DE DE-GATA4-1 745 bp overlap
ChIP DE DE-GATA4-2 745 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 291 bp overlap
ChIP foregut GSE117136.GATA4.foregut 581 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP AGS GSE51936.GATA6.AGS 144 bp overlap
ChIP DE DE-GATA6-1 745 bp overlap
ChIP DE DE-GATA6-2 745 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 553 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 745 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 443 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 745 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 682 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 577 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 704 bp overlap
ChIP foregut GSE117136.GATA6.foregut 466 bp overlap
KLF1 5 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
ChIP HEK293 ENCFF159QSW 111 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 188 bp overlap
KLF10 3 datasets
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF14 3 datasets
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF2 3 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 3 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
MAF 3 datasets
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 3 datasets
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MECOM 1 dataset
ChIP SKH1 GSE102697.MECOM.SKH1 158 bp overlap
MZF1 3 datasets
Motif DE_48h DE_48h-MZF1_MA0056.3 8 bp overlap
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 255 bp overlap
NKX2-3 2 datasets
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 2 datasets
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_48h DE_48h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 177 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 179 bp overlap
Nkx2-1 2 datasets
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nr2F6 2 datasets
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
PATZ1 3 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
PRDM1 3 datasets
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
Prdm5 2 datasets
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap
Rarb 2 datasets
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Motif DE_72h DE_72h-Rarb_MA0857.1 16 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 304 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 713 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 685 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 553 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 482 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 634 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 739 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 659 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 273 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 275 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 270 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 602 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 292 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 251 bp overlap
TCF7L1 2 datasets
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
ZNF136 1 dataset
ChIP HEK293T GSE78099.ZNF136.HEK293T 287 bp overlap
ZNF707 2 datasets
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF76 3 datasets
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
Motif DE_60h DE_60h-ZNF76_MA1716.2 17 bp overlap
Motif DE_72h DE_72h-ZNF76_MA1716.2 17 bp overlap