chr2 : 60,002,287 60,002,727
440 bp 44 TFs 0 linked genes
This 440 bp open chromatin element has no linked target genes and is bound by 44 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:59,997,287 – 60,007,727
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 56 bp overlap
BRD4 1 dataset
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 116 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CTCF 79 datasets
ChIP B cell ENCFF506FKC 107 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 213 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 151 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 197 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 115 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 126 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 120 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 162 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 113 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 196 bp overlap
ChIP GM12864 ENCFF357DQE 170 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
ChIP GM12878 ENCFF511URZ 145 bp overlap
ChIP GM12878 ENCFF635MMB 131 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 161 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 129 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 86 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 235 bp overlap
ChIP GM23338 ENCFF772DML 137 bp overlap
ChIP H1 ENCFF414GZI 158 bp overlap
ChIP H1 ENCFF764RHO 169 bp overlap
ChIP H9 ENCFF152GTF 76 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 166 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 136 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 128 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 159 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 153 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 144 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 243 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 150 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 105 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 90 bp overlap
ChIP HepG2 ENCFF348BUL 138 bp overlap
ChIP HepG2 ENCFF757EKU 189 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 150 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 154 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 87 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 103 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 198 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 123 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 103 bp overlap
ChIP MCF-7 ENCFF198DQX 149 bp overlap
ChIP MCF-7 ENCFF494VXA 149 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 74 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 136 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 156 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 109 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 72 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 161 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 224 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 200 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 99 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 153 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 292 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 94 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 124 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 195 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 134 bp overlap
ChIP endodermal cell ENCFF471YCZ 174 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 131 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 148 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 166 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 228 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 79 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 239 bp overlap
ChIP hepatocyte ENCFF263BLJ 206 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 132 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 151 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 172 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 127 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 99 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 112 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 276 bp overlap
ChIP neural progenitor cell ENCFF420RBO 216 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 147 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 117 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 123 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 184 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 238 bp overlap
HNF1B 1 dataset
Motif ES_0h ES_0h-HNF1B_MA0153.2 13 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 172 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 127 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 403 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 119 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 221 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 199 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 302 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 230 bp overlap
RAD21 21 datasets
ChIP GM12878 ENCFF046CBW 127 bp overlap
ChIP GM12878 ENCFF101UQZ 90 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 101 bp overlap
ChIP H1 ENCFF698EWO 148 bp overlap
ChIP H1 ENCFF967OJF 134 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 166 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 104 bp overlap
ChIP HepG2 ENCFF360ZSW 119 bp overlap
ChIP HepG2 ENCFF906QIS 142 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 62 bp overlap
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 68 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 60 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 160 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 69 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 174 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 121 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 115 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 132 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 118 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 197 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 246 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 377 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 132 bp overlap
SMC3 1 dataset
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 126 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 339 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 119 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 93 bp overlap
ChIP HepG2 ENCFF843EBZ 189 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 126 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 78 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap