chr2 : 53,973,080 – 53,973,900
820 bp 37 TFs 4 linked genes
This 820 bp open chromatin element is linked to 4 target genes and is bound by 37 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ACYP2 2.0 kb Proximal Proximity
PSME4 2.3 kb Proximal Proximity
ERLEC1 186.5 kb Distal Multiome
ASB3 186.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:53,968,080 – 53,978,900
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_72h DE_72h-ATF4_MA0833.3 10 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CEBPA 1 dataset
Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap
CEBPG 1 dataset
Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap
Dmrt1 3 datasets
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
ERF::HOXB13 3 datasets
Motif DE_48h DE_48h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_60h DE_60h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_72h DE_72h-ERFHOXB13_MA1937.2 13 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 794 bp overlap
ChIP DE DE-FOXA2-2 765 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 742 bp overlap
ChIP DE DE-GATA4-2 762 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 606 bp overlap
ChIP DE DE-GATA6-2 770 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 511 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
HAND2 3 datasets
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 93 bp overlap
HNF4A 3 datasets
Motif DE_48h DE_48h-HNF4A_MA0114.5 9 bp overlap
Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap
Motif DE_72h DE_72h-HNF4A_MA0114.5 9 bp overlap
HNF4G 3 datasets
Motif DE_48h DE_48h-HNF4G_MA0484.3 9 bp overlap
Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap
Motif DE_72h DE_72h-HNF4G_MA0484.3 9 bp overlap
IKZF2 3 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
KAT7 1 dataset
ChIP HepG2 ENCFF613PTN 297 bp overlap
KLF1 5 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF2 5 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 5 datasets
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 5 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
MEF2A 1 dataset
Motif DE_72h DE_72h-MEF2A_MA0052.5 10 bp overlap
PATZ1 3 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_72h DE_72h-POU2F1SOX2_MA1962.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 384 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 673 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 463 bp overlap
SOX10 3 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 339 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 724 bp overlap
SOX2 1 dataset
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Stat6 3 datasets
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
Motif DE_72h DE_72h-Stat6_MA0520.2 10 bp overlap
Wt1 3 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 219 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 110 bp overlap
ZNF766 3 datasets
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 162 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 160 bp overlap
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