chrX : 39,150,486 – 39,151,208
722 bp 59 TFs 1 linked gene
This 722 bp open chromatin element is linked to MID1IP1 and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MID1IP1 349.3 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:39,145,486 – 39,156,208
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
CTCF 7 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 315 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 160 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 234 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 110 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 257 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 425 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 291 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
EOMES 3 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 629 bp overlap
ETV5::FOXI1 2 datasets
Motif DE_24h DE_24h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 722 bp overlap
ChIP DE DE-FOXA2-2 657 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 722 bp overlap
ChIP DE DE-GATA4-2 722 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 689 bp overlap
ChIP DE DE-GATA6-2 722 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 715 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 722 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 690 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 722 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 722 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 722 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 722 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 377 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 476 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 516 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 588 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 161 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 121 bp overlap
MGA 2 datasets
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 553 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 426 bp overlap
NR3C1 1 dataset
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 469 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 230 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 371 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 369 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM9 4 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 78 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 76 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 553 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 512 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 722 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 722 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 722 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 722 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 722 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 460 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 583 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 468 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 98 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 293 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 415 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 412 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 644 bp overlap
SPI1 2 datasets
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 129 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 123 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 76 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 242 bp overlap
Spi1 2 datasets
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 499 bp overlap
TBR1 2 datasets
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TP53 1 dataset
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 284 bp overlap
Tbx6 2 datasets
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 163 bp overlap
ChIP K562 ENCFF361LXT 182 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF532 2 datasets
ChIP NMC24335 GSE96775.ZNF532.NMC24335 306 bp overlap
ChIP NMC24335 GSE96775.ZNF532.NMC24335 54 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 72 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
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