chr21 : 28,089,406 – 28,090,561
1,155 bp 40 TFs 1 linked gene
This 1.2 kb open chromatin element is linked to LINC01697 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01697 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:28,084,406 – 28,095,561
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
BACH1 1 dataset
ChIP SW1990 GSE124406.BACH1.SW1990 258 bp overlap
BRD4 1 dataset
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 255 bp overlap
CTCF 10 datasets
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 202 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 180 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 517 bp overlap
ChIP endodermal cell ENCFF471YCZ 312 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 253 bp overlap
ChIP BLaER1 ENCFF460KDD 537 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
EGR1 2 datasets
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
Motif DE_36h DE_36h-EGR1_MA0162.5 10 bp overlap
EGR2 2 datasets
Motif DE_24h DE_24h-EGR2_MA0472.2 11 bp overlap
Motif DE_36h DE_36h-EGR2_MA0472.2 11 bp overlap
EGR4 2 datasets
Motif DE_24h DE_24h-EGR4_MA0733.2 11 bp overlap
Motif DE_36h DE_36h-EGR4_MA0733.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 210 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 357 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 422 bp overlap
ChIP DE DE-FOXA2-2 475 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 371 bp overlap
ChIP DE DE-GATA4-2 674 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 421 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 424 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 330 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 672 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 394 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
HIC2 3 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 504 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 455 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 832 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 643 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 349 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 435 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 242 bp overlap
ChIP K562 ENCFF047YKA 120 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NFE2L2 4 datasets
ChIP HeLa-S3 ENCFF449JDM 285 bp overlap
ChIP HeLa-S3 ENCSR707IUN.NFE2L2.HeLa-S3 121 bp overlap
ChIP Hep-G2 ENCSR488EES.NFE2L2.Hep-G2 179 bp overlap
ChIP HepG2 ENCFF178DRC 257 bp overlap
NFYB 1 dataset
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 315 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 446 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 206 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Prdm4 1 dataset
Motif DE_24h DE_24h-Prdm4_MA1647.3 11 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 410 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 307 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 286 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 299 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 591 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 345 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 336 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 189 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 712 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 327 bp overlap
Wt1 3 datasets
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
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